SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34852

Length: 1217 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34852

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	100%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	100%
Sma3	Polyubiquitin	-	-	-

Source	Gene names
Sma3	ubq3;

Source	GOs	Term	Type	e value	Identity
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02890.3	UBQ14 Ubiquitin family protein chr4:1278747-1279664 REVERSE LENGTH=305	100%
RefSeq	Arabidopsis thaliana	NP_974516.4	polyubiquitin 10 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002316978.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGCEI*

Protein Length: 309

Fln nts: TCTCTTCTGATCTTGGCACTTTCGGCTCGACTTTCTTTTACAGGTCTTGTTCGTTGGCATCCCTTAAGGCTTAAAT_-_ATGCAGATCTTTGTAAAAACCCTCACTGGCAAGACAATCACTCTCGAGGTTGAGAGCTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTGGCGGACTACAACATTCAAAAGGAATCTACCTTGCACCTGGTTCTCCGTCTGAGGGGAGGAATGCAGATCTTTGTCAAAACCCTAACTGGAAAGACCATCACTTTGGAAGTTGAGAGTTCTGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCCGATCAACAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGAACTCTAGCGGACTACAACATCCAGAAGGAATCTACCCTGCACCTGGTTCTTCGTTTGAGGGGTGGTATGCAGATATTCGTGAAAACTCTCACTGGCAAGACAATCACTTTGGAAGTTGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATACCCCCGGACCAGCAAAGGCTAATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACCTTGGCTGACTACAACATTCAGAAGGAATCAACACTGCATCTTGTGCTTCGACTGAGAGGTGGGATGCAGATCTTTGTGAAAACTCTGACTGGAAAAACCATTACCCTGGAGGTTGAGAGCTCAGACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAAGAGGGGATCCCTCCTGACCAGCAGAGACTGATCTTTGCGGGAAAGCAGCTGGAAGATGGGCGTACTCTGGCCGATTATAACATTCAGAAGGAGTCGACCCTGCACCTGGTACTTCGTCTCCGCGGTGGTTGTGAAATTTGA___GGGCCATGCTGGTGTTTTGGAATAATGTCGCCGTTTATGAATAAGTAGTGCTTCTGCATGTTTATGTTTGTGCTGTTTAGTCTCTATGGCTTTTATTTAAATCTGTGGTAAGATGAAGCAAACTCTGGGTTCTGATCCGCACGACAATACTGAACTATGTAAGTGTTTAATTCATGTTTTAATAGGAAGACTTTATAGCGACTATTGATTAAGGTAG

Fln Alignment:

Contig34852___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q3E7T8_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
304	80	20			0.995493
334	66			33	0.997452
656	66		33		0.997452
667	33			66	0.997452
668		33		66	0.997452
669	33		66		0.997452
670		66		33	0.997452
754	33		66		0.997452
767	33		66		0.997452
929			70	30	1.0
1105		11		88	1.0
1215	22		77		0.999999
1216		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain