SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34780

Length: 1200 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34780

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	100%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	100%
Sma3	Polyubiquitin	-	-	-

Source	Gene names
Sma3	ubq3;

Source	GOs	Term	Type	e value	Identity
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02890.3	UBQ14 Ubiquitin family protein chr4:1278747-1279664 REVERSE LENGTH=305	100%
RefSeq	Arabidopsis thaliana	NP_974516.4	polyubiquitin 10 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002316978.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC*

Protein Length: 307

Fln nts: ATGGGATTGTGTTTTGCAGTTTTGGCTGATTTTCCGAACGCGATTGCTGTGCTCTCTTCTGTTTCATTTCCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTCTCGCCGACTACAACATCCAGAAGGAATCTACTCTTCACCTCGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTGATCTTTGCTGGAAAGCAACTTGAGGACGGACGCACTCTTGCCGATTACAACATCCAGAAGGAGTCGACTCTTCACCTTGTCCTGCGGCTCAGAGGCGGGATGCAAATCTTTGTGAAAACCCTGACCGGCAAGACCATCACGCTAGAAGTTGAGAGCTCCGACACTATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAGCAGAGATTGATCTTTGCGGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTATAACATTCAGAAGGAGTCAACCCTGCATCTTGTCCTTCGGCTCCGTGGTGGTATGCAGATATTTGTGAAGACGTTGACCGGCAAGACGATCACACTGGAGGTTGAGAGCTCCGATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAGAGGCTCATATTCGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAAGAGTCTACGCTTCACCTTGTCTTGCGTTTGCGTGGTGGGTGTTGA___AATTCTCAACATCTATTTTCATGAACAGGGGTCTAAATGCGAATTTCTTTTAATTCTTAACTTAGCTAGCAGTTAGATGCCGCAATGCCGCGGCATCGTTTATATAGGTTTTAGATGTTATCTTTAGATGTCGTGCATAATGAAGAAGACGACTTTCAATAAAATAAAGCTTTAAAG

Fln Alignment:

Contig34780___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q3E7T8_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
435	90		10		0.90298
444			12	87	0.992554
539		11		88	0.923564
591	87	12			0.992554
606	12		87		0.992554
612		87		12	0.992554
621		14		85	0.993533
672		75		25	0.996473
759		22	77		0.999999
807	10		90		0.90298
982		8		92	0.999718
1006		84		15	1.0
1019	82		17		1.0
1071		14		71	0.984337
1077		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain