SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34734

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene34734
CCAACTCATAAAGGCTGTTGCTTTCTCTCTTTTCTGTTTCTATCTGTTTGGGTATTTTGAGGCTTGCATTCATGGATGACCCGGAGGGCCTAAGATCTCCCTTGCTTGATCCAGTAAACGAAGAAGAAAAATCACCCATATGGGGACGATTTTCCCCATCTTTATGAATTTCCCAACGATCGCCGGCCCATTACAGACTGCAAGAGTCTTGGCATTGAATGGTGGCAAGAGTCTAAGAAGCTCTGGTATCTTTCAGGTCCTGCTATTTTCACCACAGTCTGCCGGTATTCGCTGGGGGGCAATCACCCAGACATTTGCTGGGCATATAGGCGAGCTGGAACTCGCGGCCGTTTCCATTGAGAATTCGGTGATTGCTGGGCTTTCATTTGGGATCATGTTGGGGATGGGGAGTGCGCTCGAAACTCTCTGCGGGCAATCC

Ace file of the UniGene sp_v3.0_unigene34734 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] emb\|CAA66809.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAB01841.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL15295.1\| AT3g26590/MFE16_11 [Arabidopsis thaliana] gb\|AAN73299.1\|	-	-	4.0e-22	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Multidrug resistance pump, putative	-	-	1.811e-26	-

Source	Gene names
Sma3	117M18_21; 117M18_23; AT4g25640; At1g12950; At1g47530; At3g26590; At4g25640; At5g10420; At5g38030; At5g44050; At5g65380; DDTFR18; F12B17_230; F16N3.20; GSVIVT00009468001; GSVIVT00009469001; GSVIVT00009471001; GSVIVT00009473001; GSVIVT00010745001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26590.1	MATE efflux family protein chr3:9761927-9765259 REVERSE LENGTH=500	4.0e-24	81%
RefSeq	Arabidopsis thaliana	NP_189291.1	mate efflux domain-containing protein [Arabidopsis thaliana]	5.0e-24	81%
RefSeq	Populus trichocarpa	XP_002333719.1	predicted protein [Populus trichocarpa]	1.0e-27	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg: Overlapping hits, possible frame ERROR between 128 and 121, and overlapping frame ERROR between 297 and 296, Distance to subject end: 378 aas, your sequence is shorter than subject: 124 - 500

Fln protein: MDDPEGLRSPLLDPVNxxxxNHPYGDDFPHLYEFPNDRRPITDCKSLGIEWWQESKKLWYLSGPAIFTTVCRYSxxxAITQTFAGHIGELELAAVSIENSVIAGLSFGIMLGMGSALETLCGQS

Protein Length: 125

Fln nts: CCAACTCATAAAGGCTGTTGCTTTCTCTCTTTTCTGTTTCTATCTGTTTGGGTATTTTGAGGCTTGCATTC_-_ATGGATGACCCGGAGGGCCTAAGATCTCCCTTGCTTGATCCAGTAAACxxxxxxxxxxxxAATCACCCATATGGGGACGATTTTCCCCATCTTTATGAATTTCCCAACGATCGCCGGCCCATTACAGACTGCAAGAGTCTTGGCATTGAATGGTGGCAAGAGTCTAAGAAGCTCTGGTATCTTTCAGGTCCTGCTATTTTCACCACAGTCTGCCGGTATTCGCxxxxxxGGGCAATCACCCAGACATTTGCTGGGCATATAGGCGAGCTGGAACTCGCGGCCGTTTCCATTGAGAATTCGGTGATTGCTGGGCTTTCATTTGGGATCATGTTGGGGATGGGGAGTGCGCTCGAAACTCTCTGCGGGCAATCC

Fln Alignment:

Contig34734___MDDPEGLRSPLLDPVNxxxNHPYGDDFPHLYEFPNDRRPITDCKSLGIEWWQESKKLWYLSGPAIFTTVCRYSLxAITQTFAGHIGELELAAVSIENSVIAGLSFGIMLGMGSALETLCGQS
B8LKL5_______________MDDQDSFRSSLLPPVNxxxSGKYGDDLPHRYDFPDDRRPITDCRSLANGCWEESKKLWYLSGPAIFTSVCQYSLxALTQTFAGHIGELELAAVSIENSVIAGLSFGIMMGMGSALETLCGQS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
408	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain