SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34648

Length: 486 nt

UniGene Fasta

>sp_v3.0_unigene34648
AAGTATTAGTGGAGAGCATGGATTGCCAGCTTGCACATATTGGCCTTTATGCGAGTCGAGATTATTGTCGTTTTTGGGGGAAGAGCTGGCTTATGATTATCGTTACAAGCTACTACCTGGCAAGGGATGCCCCTGTAACTGTGGGGCTAGTAATTGCCGTGGAAGGTTGTACTAGAGGGTGAGTTTGCAGTTCAGCAATCATAGACTCTCTATTGTTTCCTCACATAAATACTATCAATGGAAGCAGGAGCAAAGCTTGTAACGCTTCAGATGGTCAATGTGCATATTTGAGTCTATAATATTAAGGTGAGGCATTGTTCTGATGGTGACCCTTTTTGGGTCGAAGTCTTTACAAAGCTGAATGCACTTGAAATGGAAATAGAAAATGTAGTTTGTCATACCACAGTGTGTCATGGTTATGTGGTAACAAATTCTATGGAAGCTTTATGTAATATGTGAGAGTTGTGTTATTCTATTGATGCACCA

Ace file of the UniGene sp_v3.0_unigene34648

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative SET domain protein SDG117 [Oryza sativa Japonica Group]	-	-	4.0e-14	78%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	85%
Sma3	SET domain protein	-	-	2.095e-06	-

Source	Gene names
Sma3	49D11.8; GSVIVT00025025001; OSJNBb0060O16.33; Os02g0708600; OsI_08641; OsJ_08098; PHYPADRAFT_186998; PHYPADRAFT_198425; PHYPADRAFT_88814; POPTRDRAFT_208346; POPTRDRAFT_719406; SDG1505; SDG917; SDG953;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310194.1	SET domain protein [Populus trichocarpa]	6.0e-16	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SP28

Fln msg: Separated hits, possible frame ERROR between 62 and 74, your sequence is shorter than subject: 58 - 740

Fln protein: VLVESMDCQLAHIGLYASRxxxxxLGEELAYDYRYKLLPGKGCPCNCGASNCRGRLY*

Protein Length: 59

Fln nts: AAGTATTAGTGGAGAGCATGGATTGCCAGCTTGCACATATTGGCCTTTATGCGAGTCGAGAxxxxxxxxxxxxTTTGGGGGAAGAGCTGGCTTATGATTATCGTTACAAGCTACTACCTGGCAAGGGATGCCCCTGTAACTGTGGGGCTAGTAATTGCCGTGGAAGGTTGTACTAGAGGGTGAGTTTGCAGTTCAGCAATCATAGACTCTCTATTGTTTCCTCACATAAATACTATCAATGGAAGCAGGAGCAAAGCTTGTAACGCTTCAGATGGTCAATGTGCATATTTGAGTCTATAATATTAAGGTGAGGCATTGTTCTGATGGTGACCCTTTTTGGGTCGAAGTCTTTACAAAGCTGAATGCACTTGAAATGGAAATAGAAAATGTAGTTTGTCATACCACAGTGTGTCATGGTTATGTGGTAACAAATTCTATGGAAGCTTTATGTAATATGTGAGAGTTGTGTTATTCTATTGATGCACCA

Fln Alignment:

Contig34648___VLVESMDCQLAHIGLYASRDxxxxLGEELAYDYRYKLLPGKGCPCNCGASNCRGRLY
A9SP28_______________VLVESMDCQLAHIGFFANRDxxxxIGEELAYDYRYKLLPGKGCPCYCGAPKCRGRLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain