SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34625

Length: 2731 nt

UniGene Fasta

>sp_v3.0_unigene34625
ATGGGGGCATGGTAATGCCATAGGCGGTCCGGTGCCCGCCTGGATTTCCCGAAGAAAATTTACATAGAGTTGCGGTGGCGACAACCTGTTTGACTTGTCTTGAATTGCGTTGTAACTGTGAGTATAAAATTTCTTTCCCTGAGATCTCACAGCCTGCGCTGCAAGAAACTCGAATAACAAAACAGAGCAAGAAATTGTATATTCGGATACTATGGCTGTGCCTGAGCAGGAGAAAGCTGAGCAGAAGAAAGCAGTCACAGAGAAAGCAATTGTATGTTCGGATACTATGGTTGAGTTTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACCCAGATGAGTGAAACCCACAAAATTTTGAGCTCTTTGCTGTGCAATGAGGAACGCGATTTCTTGATAAAGAAACAATGGAGAGACGGTGAAGGTTGAGGAACTGGAAGGGAAATATGTGGGTTTGTACTTTTCTGCCCATCGGTGCCCTCCAGGTAGGGATTTCACCTCCGTTTTGTCCACAACCTATAAAAAGTTGTTGGAGAAAGGCGACTTCGAGATCGTCTTCATTTCTGCAGATCGTGATGAGAAGTCATTCGAAGAAGACCACCAGACCATGCCATGGCTTGCCGTGCCATTCTCAGACGAAAATACAAGGAAGAATCTTGATGAGAAATTTCAGGTCAATGGCATTCCGTGCCTTGTTATTTTGGACAAAAAGAGGGGAGTGATAACCACTGAAGGTGTGGAGATCATTAAAGAATTTGATTTTGAGGCATATCCATTCGCTACAGAGAGGCTCGATGAGCTGAGGGCTAAAGAGGAGGCCTTAAGGGCTGCACAGACTGTAGAGTCTCTTCTAAGGTCCGATGAACGAGATTTTGTCATTGGCCATGGAGGAAGAAAGGTCCCGGTGGCGGAGCTTACAGGGAAGACAGTGGGTCTGTATTTCTCAGCCCACTGGTATGGTCCCTGTAGAAATTTCACTCCACAGCTTGTGGATATTTACAATGAGCTTTTGAAAAGAGGGGAGGACTTTGAGATTGTGTTTCTCTCGCGTGACAAAGAGGAGAAAACCTTTGAAGAGTATTACGCAAGCATGCCATGGTTAGCTTTGCCATTTGGAGACATCAATGGAAAGAAATTGTGGCGCTTCTTCGAAGTTTCTGGTATGCCAACATTGATCATTTTAGGTCCAGATGGGAAAACAGTACAGACTGATACAGTGAGCCATATACGAGACTATGGAATCCGAGCTTACCCGTTTACAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTGAGATCGTTTTCATTTCTATGGACCGAGATCAAGAGGCTTTTGAAGATTATTACAAAGACATGCCATGGCTGGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCTCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATGGGAAAACTGTGACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGCAAAAAATGTGACTACGATCTTCATGTGGAATGTGGTTTGAAAGATCAACAGGATCAGGTAAACCAGGAAAAGGGACAGGATACAGATACTGTTGTGGATGAGAACTGCAAGCCAGAAGGAGTAATCTGTGATGGAGATGTCTGTTACAGAGCTTAAGCTTGGTCATGATAAGGGCGACTCATTACATATGCTATACTTCCTGGCCTTCAGTACATTGCTTGAGATTCCATGGTTATCTTTGTGTAGATTGATAGATAACTGAGCTTTGTTGAGTAAAGGAGGTCATGATCTATGTTCTCAATAAATAAATTGAGTACTTCATAGTCTCTACTGGGCTTCTAGTATGGGATTTCATCAATGTTAGCATCTGGTGACTTACGGTTGTGCAATTTGCTTTTTGCATATGGATTTTATTCTCACATGTGTTGTTCAGCTCCATTGCCACGTTCCTGTGTAATTCTGAGTGTATACCGCTACATGTTAATGTTTTTGGTCCGTAAATATTCTCGGTTCATGCCCACTGACTGTACTCTCTGTACATTGCCATGAACAGAGATGATAACTCATCTAAATGACATGTTAAACTAATCTTG

Ace file of the UniGene sp_v3.0_unigene34625

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60420.1	DC1 domain-containing protein chr1:22261978-22264243 FORWARD LENGTH=578	49%
RefSeq	Arabidopsis thaliana	NP_564756.1	putative nucleoredoxin 1 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002314537.1	predicted protein, partial [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is longer than subject: 695 - 586

Fln protein: MAVPEQEKAEQKKAVTEKAIVCSDTMVEFEPEQEKAVTEQEIVCSDTMAEPEQEKAVTEQEIVCSDTMAEPEQEKAVTEQEIVCSDTMAEPEQEKAVTEQEIVCSDTMAEPEQEKAVTQMSETHKILSSLLCNEERDFLIxxNNGETVKVEELEGKYVGLYFSAHRCPPGRDFTSVLSTTYKKLLEKGDFEIVFISADRDEKSFEEDHQTMPWLAVPFSDENTRKNLDEKFQVNGIPCLVILDKKRGVITTEGVEIIKEFDFEAYPFATERLDELRAKEEALRAAQTVESLLRSDERDFVIGHGGRKVPVAELTGKTVGLYFSAHWYGPCRNFTPQLVDIYNELLKRGEDFEIVFLSRDKEEKTFEEYYASMPWLALPFGDINGKKLWRFFEVSGMPTLIILGPDGKTVQTDTVSHIRDYGIRAYPFTKDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDFEIVFISMDRDQEAFEDYYKDMPWLALPFGDKTKKDLSRYFRVRGIPSLIVIGPDGKTVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHVECGLKDQQDQVNQEKGQDTDTVVDENCKPEGVICDGDVCYRA*

Protein Length: 696

Fln nts: ATGGGGGCATGGTAATGCCATAGGCGGTCCGGTGCCCGCCTGGATTTCCCGAAGAAAATTTACATAGAGTTGCGGTGGCGACAACCTGTTTGACTTGTCTTGAATTGCGTTGTAACTGTGAGTATAAAATTTCTTTCCCTGAGATCTCACAGCCTGCGCTGCAAGAAACTCGAATAACAAAACAGAGCAAGAAATTGTATATTCGGATACT_-_ATGGCTGTGCCTGAGCAGGAGAAAGCTGAGCAGAAGAAAGCAGTCACAGAGAAAGCAATTGTATGTTCGGATACTATGGTTGAGTTTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACCCAGATGAGTGAAACCCACAAAATTTTGAGCTCTTTGCTGTGCAATGAGGAACGCGATTTCTTGATAxxxxxxAACAATGGAGAGACGGTGAAGGTTGAGGAACTGGAAGGGAAATATGTGGGTTTGTACTTTTCTGCCCATCGGTGCCCTCCAGGTAGGGATTTCACCTCCGTTTTGTCCACAACCTATAAAAAGTTGTTGGAGAAAGGCGACTTCGAGATCGTCTTCATTTCTGCAGATCGTGATGAGAAGTCATTCGAAGAAGACCACCAGACCATGCCATGGCTTGCCGTGCCATTCTCAGACGAAAATACAAGGAAGAATCTTGATGAGAAATTTCAGGTCAATGGCATTCCGTGCCTTGTTATTTTGGACAAAAAGAGGGGAGTGATAACCACTGAAGGTGTGGAGATCATTAAAGAATTTGATTTTGAGGCATATCCATTCGCTACAGAGAGGCTCGATGAGCTGAGGGCTAAAGAGGAGGCCTTAAGGGCTGCACAGACTGTAGAGTCTCTTCTAAGGTCCGATGAACGAGATTTTGTCATTGGCCATGGAGGAAGAAAGGTCCCGGTGGCGGAGCTTACAGGGAAGACAGTGGGTCTGTATTTCTCAGCCCACTGGTATGGTCCCTGTAGAAATTTCACTCCACAGCTTGTGGATATTTACAATGAGCTTTTGAAAAGAGGGGAGGACTTTGAGATTGTGTTTCTCTCGCGTGACAAAGAGGAGAAAACCTTTGAAGAGTATTACGCAAGCATGCCATGGTTAGCTTTGCCATTTGGAGACATCAATGGAAAGAAATTGTGGCGCTTCTTCGAAGTTTCTGGTATGCCAACATTGATCATTTTAGGTCCAGATGGGAAAACAGTACAGACTGATACAGTGAGCCATATACGAGACTATGGAATCCGAGCTTACCCGTTTACAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTGAGATCGTTTTCATTTCTATGGACCGAGATCAAGAGGCTTTTGAAGATTATTACAAAGACATGCCATGGCTGGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCTCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATGGGAAAACTGTGACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGCAAAAAATGTGACTACGATCTTCATGTGGAATGTGGTTTGAAAGATCAACAGGATCAGGTAAACCAGGAAAAGGGACAGGATACAGATACTGTTGTGGATGAGAACTGCAAGCCAGAAGGAGTAATCTGTGATGGAGATGTCTGTTACAGAGCTTAA___GCTTGGTCATGATAAGGGCGACTCATTACATATGCTATACTTCCTGGCCTTCAGTACATTGCTTGAGATTCCATGGTTATCTTTGTGTAGATTGATAGATAACTGAGCTTTGTTGAGTAAAGGAGGTCATGATCTATGTTCTCAATAAATAAATTGAGTACTTCATAGTCTCTACTGGGCTTCTAGTATGGGATTTCATCAATGTTAGCATCTGGTGACTTACGGTTGTGCAATTTGCTTTTTGCATATGGATTTTATTCTCACATGTGTTGTTCAGCTCCATTGCCACGTTCCTGTGTAATTCTGAGTGTATACCGCTACATGTTAATGTTTTTGGTCCGTAAATATTCTCGGTTCATGCCCACTGACTGTACTCTCTGTACATTGCCATGAACAGAGATGATAACTCATCTAAATGACATGTTAAACTAATCTTG

Fln Alignment:

Contig34625___MAEPEQEKAVTQMSETHKILSSLLCNEERDFLIxNNGETVKVEELEGKYVGLYFSAHRCPPGRDFTSVLSTTYKKLLEKGDFEIVFISADRDEKSFEEDHQTMPWLAVPFSDENTRKNLDEKFQVNGIPCLVILDKKRGVITTEGVEIIKEFDFEAYPFATXXXXXXXXXXXXXXXXQTVESLLRSDERDFVIGHGGRKVPVAELTGKTVGLYFSAHWYGPCRNFTPQLVDIYNELLKRGEDFEIVFLSRDKEEKTFEEYYASMPWLALPFGDINGKKLWRFFEVSGMPTLIILGPDGKTVQTDTVSHIRDYGIRAYPFTKDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDFEIVFISMDRDQEAFEDYYKDMPWLALPFGDKTKKDLSRYFRVRGIPSLIVIGPDGKTVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHVECGLKDQQDQVNQEKGQDTDTVVDENCKPEGVICDGDVCYRA
B8LKG4_______________MAELEQEKAVTHVGETHESLSSLLCNEERDFLIxNNGDKVKVEELEGKYVGLYFSAHWCPPCRSFTPVLSEIYKKLLEKGDFDIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKNLNQAFQVHGIPCLVILDKEGRVITAKGVEIIKEYSAEAYPFTAERLDELRAKEEAIRAAQTVESLLLSDERDFVLGHEGTQVPVAELAGKTVGLYFSAHWCGPCRSFTPQLVEIYNELLKKGEAFEIVFLSRDKEEKAFEEYYASMPWLALPFADNTEKNLSRYFRVPGIPTLIILGPDGKTVQTDAVGLIRDYGIRAYPFTKERLDELEAEEEAKREAQTLESLLVSDERNFVINHGDAQVLVSELVGKTVALYFSAHWCPPCRSFTPELTKVYNELKERGETFEIVFISMDRNQDAFEDYYKSMPWLALPFGDKTKKDLSRFFRVRGIPSLIVVGPDGKTVTSNARSAVSTHGARAYPFTEAHFQRLQKEMKELVENSPKEIKYNQHEHPLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHLPCALKDQQDPGNQEKGQNTDNAVDENCKPAGVICDGDVCYKA

SNPs (tot: 3)

Position	C %	G %	T %	Probability
2485		83	16	1.0
2582	14	7	78	0.999974
2611	16		83	0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
298	564	TGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGC TGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGC TGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGC TGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGC TGAGCCTGAGCAGGAGAAAGCAGTCAC	267

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain