SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34589

Length: 783 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene34589 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH	-	-	0.0	80%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	88%
Sma3	AP2 domain-containing transcription factor	-	-	1.87354e-42	-

Source	Gene names
Sma3	117M18_31; AIL1; AIL4; AIL5; AIL6; AIL7; ANT; AP2D14; AP2D16; AP2LP; At1g51190; At1g72570; At1g79700; At2g41710; At4g37750; At5g10510; At5g57390; At5g65510; BBM; BBM2; BcAP2; CKC1; CrANTL1; DRG; F11M15.6; F12B17.140; F28P22.24; GSVIVT00011815001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	PRELI/MSF1	IPR006797	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302387.1	AP2 domain-containing transcription factor [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
380	83	16			0.994512
382	83			16	0.994512
418	20		80		0.995493
428	80	20			0.995493
429		20	80		0.995493
431			80	20	0.995493
483	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain