SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34469

Length: 2093 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene34469
TCTCAGCTATATTCAAGCTAAGGTTTCATAGTTTATAAGTTACGTAGCAGGAGGAAAATGTTGAACTCAAAGACGTTGCTCTGCCCTGGCCCTTGCCCTTCCAGGGCAGCTGTGAAGTACTTGTTAATTGTCATTCTGCTGGTCATCATTCAGTACCTGGATACAGCAGCAGGAAAGCATTGGCAGACAACCAGGCATTACAAGTTCAATGTGAGGCAGAGTAATGTGACACGTCTTTGCAACACAAAACCTTTGATCACAGTGAATGGACAATATCCAGGACCTACTATTTTTGCTCAGGAGGGAGATCAAGTAATTATAAAACTGGTAAACCACGTCAAGGACAACGTGACTATTCACTGGCATGGGATTCGACAGCTGAGATCTGGATGGGCAGATGGTCCTGGTTATATCACCCAATGTCCACTTCAAACGGGAATGAGTTACGTTTATAACTTCACCATCACAGGACAGAGAGGAACTCTATGGTGGCACGCACACATTTCTTGGTTAAGAGCTAGTGTACATGGTGCCATCATTATATATCCTAAGCCACATGTTCCCTACCCATTTCCCAAGCCATACAAAGAAGTCCCCATTATTCTGGGAGAATGGTGGAATGCAGATACTGAGAAGGTTATTCAGCAAGCCCTCCAATCAGGAGGAGGTCCAAATGTGTCAGATGCCTACACTATAAATGGACTTCCAGGACCACTTTACAACTGCTCCAATGATACATTTGTTCTAAATGTCAATCCCGGGAAGACATATCTTCTTCGAATCATCAATGCTGCACTCAATGATGAGCTCTTCCTTGCCATTGCAAATCACAGCATGACTGTGGTGGAAGTAGATGCAGTTTATGTGAAGCCTTTCCAGACAGACACTCTTGTTATAACACCTGGCCAAACCACCAATGTGTTGTTCACTACTAATGCTACTGTTAATGTTGGAGGAGTTAACCAGTTTTACATAGCAGCTCGCCCATTTGCTACAGGTGGTGGAACATTTGATAACTCCACTGTTGCGGGAATTGTGAGCTACAACATTTCCAACTCTAATACCTCTTCCACCATTATGATGCCTAAACTCCCAGCCCTTAATGACACTTCCTTTGCAGCCAACTTTAGTGCAAAACTTAGAAGCTTGGCTACCCCACAATTCCCTGCACTGGTTCCTCAAACAGTTGACAAAAAACTTTTCTTTACAGTTGGGCTAGGACTGAATCCTTGTCCAAAGGGGATGGGAAATGCCACATGCCAGGCACCCAATGGGACAAGATTCACTGCGTCTGTCAACAACATTTCTTTTGTTCTCCCAAACACTGCTCTTCTTCAATCCCACTATTTCAAGCAGATGAAAGGAGTTTATAAGACTAATTTTCCAGACAATCCTCCATTCCCATTCAATTACACTGGCACTCCACCAAATAATACACAGGCTGTGAATGGGACTAGAGTAAAAGTCCTTCCCTTTAACACAACTGTTCAATTGATTCTTCAAGACACCAGCATCTTCAGCACAGATAGTCACCCTGTCCATCTCCATGGCTTCAATTTCTTTGTGGTGGGCCAAGGTGTTGGAAACTACAATGAATCAACAGATGCACCAAACTTTAACCTCATTGACCCTGTTGAGAGAAACACTGTGGGAGTTCCCAAAGGAGGTTGGGCTGCTATCAGATTCCGTGCAGACAATCCAGGGGTGTGGTTCATGCACTGTCATTTGGAGGTTCACACATCATGGGGGCTGAAGATGGCGTGGGTAGTAAAGAACGGAAAAGGGCCCCTTCAAACTCTCCCACCTCCCCCTTCTGACCTCCCTCCTTGTTGATCTTCTTCCTTCCTTCCCGTTACCACCATCAGTTTCATTTCATTTTATTTTTTGTTTCAGATGTTGATGTTGGGTTTTTGTCAGGAAGATTTCATAATAAATAGAATGTCACCTTTGGCCTCTCTTCTCAGGGAGCCTTTTCATAGAATGAGGAGGATGGTTATTTATTCAAGGTGAGAAAAAGGCAAAAAGGGGCAACCAATCAGAGTGAAATAGAACTGTATCGAATCAATGTACATACAAGTGTTTGGTACATGAAT

Ace file of the UniGene sp_v3.0_unigene34469 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI2_PINTA	-	-	88%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	98%
Sma3	Laccase	-	-	-

Source	Gene names
Sma3	Lac5;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Laccase	IPR017761	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60020.1	LAC17, ATLAC17 laccase 17 chr5:24168072-24170223 FORWARD LENGTH=577	66%
RefSeq	Arabidopsis thaliana	NP_200810.1	laccase 17 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002317505.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AUI2

Fln msg:

Fln protein: MLNSKTLLCPGPCPSRAAVKYLLIVILLVIIQYLDTAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYPGPTIFAQEGDQVIIKLVNHVKDNVTIHWHGIRQLRSGWADGPGYITQCPLQTGMSYVYNFTITGQRGTLWWHAHISWLRASVHGAIIIYPKPHVPYPFPKPYKEVPIILGEWWNADTEKVIQQALQSGGGPNVSDAYTINGLPGPLYNCSNDTFVLNVNPGKTYLLRIINAALNDELFLAIANHSMTVVEVDAVYVKPFQTDTLVITPGQTTNVLFTTNATVNVGGVNQFYIAARPFATGGGTFDNSTVAGIVSYNISNSNTSSTIMMPKLPALNDTSFAANFSAKLRSLATPQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTNFPDNPPFPFNYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHGFNFFVVGQGVGNYNESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKGPLQTLPPPPSDLPPC*

Protein Length: 593

Fln nts: TCTCAGCTATATTCAAGCTAAGGTTTCATAGTTTATAAGTTACGTAGCAGGAGGAAA_-_ATGTTGAACTCAAAGACGTTGCTCTGCCCTGGCCCTTGCCCTTCCAGGGCAGCTGTGAAGTACTTGTTAATTGTCATTCTGCTGGTCATCATTCAGTACCTGGATACAGCAGCAGGAAAGCATTGGCAGACAACCAGGCATTACAAGTTCAATGTGAGGCAGAGTAATGTGACACGTCTTTGCAACACAAAACCTTTGATCACAGTGAATGGACAATATCCAGGACCTACTATTTTTGCTCAGGAGGGAGATCAAGTAATTATAAAACTGGTAAACCACGTCAAGGACAACGTGACTATTCACTGGCATGGGATTCGACAGCTGAGATCTGGATGGGCAGATGGTCCTGGTTATATCACCCAATGTCCACTTCAAACGGGAATGAGTTACGTTTATAACTTCACCATCACAGGACAGAGAGGAACTCTATGGTGGCACGCACACATTTCTTGGTTAAGAGCTAGTGTACATGGTGCCATCATTATATATCCTAAGCCACATGTTCCCTACCCATTTCCCAAGCCATACAAAGAAGTCCCCATTATTCTGGGAGAATGGTGGAATGCAGATACTGAGAAGGTTATTCAGCAAGCCCTCCAATCAGGAGGAGGTCCAAATGTGTCAGATGCCTACACTATAAATGGACTTCCAGGACCACTTTACAACTGCTCCAATGATACATTTGTTCTAAATGTCAATCCCGGGAAGACATATCTTCTTCGAATCATCAATGCTGCACTCAATGATGAGCTCTTCCTTGCCATTGCAAATCACAGCATGACTGTGGTGGAAGTAGATGCAGTTTATGTGAAGCCTTTCCAGACAGACACTCTTGTTATAACACCTGGCCAAACCACCAATGTGTTGTTCACTACTAATGCTACTGTTAATGTTGGAGGAGTTAACCAGTTTTACATAGCAGCTCGCCCATTTGCTACAGGTGGTGGAACATTTGATAACTCCACTGTTGCGGGAATTGTGAGCTACAACATTTCCAACTCTAATACCTCTTCCACCATTATGATGCCTAAACTCCCAGCCCTTAATGACACTTCCTTTGCAGCCAACTTTAGTGCAAAACTTAGAAGCTTGGCTACCCCACAATTCCCTGCACTGGTTCCTCAAACAGTTGACAAAAAACTTTTCTTTACAGTTGGGCTAGGACTGAATCCTTGTCCAAAGGGGATGGGAAATGCCACATGCCAGGCACCCAATGGGACAAGATTCACTGCGTCTGTCAACAACATTTCTTTTGTTCTCCCAAACACTGCTCTTCTTCAATCCCACTATTTCAAGCAGATGAAAGGAGTTTATAAGACTAATTTTCCAGACAATCCTCCATTCCCATTCAATTACACTGGCACTCCACCAAATAATACACAGGCTGTGAATGGGACTAGAGTAAAAGTCCTTCCCTTTAACACAACTGTTCAATTGATTCTTCAAGACACCAGCATCTTCAGCACAGATAGTCACCCTGTCCATCTCCATGGCTTCAATTTCTTTGTGGTGGGCCAAGGTGTTGGAAACTACAATGAATCAACAGATGCACCAAACTTTAACCTCATTGACCCTGTTGAGAGAAACACTGTGGGAGTTCCCAAAGGAGGTTGGGCTGCTATCAGATTCCGTGCAGACAATCCAGGGGTGTGGTTCATGCACTGTCATTTGGAGGTTCACACATCATGGGGGCTGAAGATGGCGTGGGTAGTAAAGAACGGAAAAGGGCCCCTTCAAACTCTCCCACCTCCCCCTTCTGACCTCCCTCCTTGTTGA___TCTTCTTCCTTCCTTCCCGTTACCACCATCAGTTTCATTTCATTTTATTTTTTGTTTCAGATGTTGATGTTGGGTTTTTGTCAGGAAGATTTCATAATAAATAGAATGTCACCTTTGGCCTCTCTTCTCAGGGAGCCTTTTCATAGAATGAGGAGGATGGTTATTTATTCAAGGTGAGAAAAAGGCAAAAAGGGGCAACCAATCAGAGTGAAATAGAACTGTATCGAATCAATGTACATACAAGTGTTTGGTACATGAAT

Fln Alignment:

Contig34469___MLNSKTLLCPGPCPSRAAVKYXXXXXXXXXIQYLDTAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYPGPTIFAQEGDQVIIKLVNHVKDNVTIHWHGIRQLRSGWADGPGYITQCPLQTGMSYVYNFTITGQRGTLWWHAHISWLRASVHGAIIIXXXXXXXXXXXXXXKEVPIILGEWWNADTEKVIQQALQSGGGPNVSDAYTINGLPGPLYNCSNDTFVLNVNPGKTYLLRIINAALNDELFLAIANHSMTVVEVDAVYVKPFQTDTLVITPGQTTNVLFTTNATVNVGGVNQFYIAARPFATGGGTFDNSTVAGIVSYXXXXXXXXXXIMMPKLPALNDTSFAANFSAKLRSLATPQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTXXXXXXXXXXNYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHXXXXXXXXXXXXXXNESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKG
Q9AUI2_______________MLNSKTLLRLCPCPSRAAVKYLLIVILLVIIQYLDTAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYPGPTIFAQEGDQVIIKLVNHVKDNVTIHWHGIRQLRSGWADGPGYITQCPLQTGMSYVYNFTITGQRGTLWWHAHISWLRASVHGAIIIYPKPHVPYPFPKPYKEVPIILGEWWNADTEKVIQQALQTGGGPNVSDAYTINGLPGPLYNCSNDTFVLNVNPRKTYLLRIINAALNDELFLAIANHSMTVVEVDAVYVKPFQTNTLVITPGQTTNVLFTTNATINVGGVNQFYIAARPFVTGGGTFDNSTVAGIVSYNISNSNTSSTIMMPKLPALNDTSFAANFSAKLRSLATSQFPALVPQTVDKKLFFTVGLGLNPCPKGMGNATCQAPNGTRFTASVNNISFVLPNTALLQSHYFKQMKGVYKTNFPDNPPFPFNYTGTPPNNTQAVNGTRVKVLPFNTTVQLILQDTSIFSTDSHPVHLHGFNFFVVGQGVGNYNESTDAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGKG

SSRs (tot: 1)

Start position	End position	Sequence	Length
244	256	GGAA GGAA GGAA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain