SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34411

Length: 2275 nt

UniGene Fasta

>sp_v3.0_unigene34411
ATGGGGGATCACACCAGTGGACGCCAAGCTCAATTCCAATCCAGCGCAATGCGGAAGCTGCAGGGCTTCGCACTCACAGAGCGCAAATGGCTTCTCCCTTTGGTGGCGAGCTCGCTGATATCGATCTTGTTGATTGTAGCTGCCCTGGTTCGATCCGAAGACTCCCGCCGCCCGGAGGTGCCACCGCGCAAGGTCATATTCGAATTCGAATCCAGTGTGGACGGGATGCCTGCTGCGCCCAGACTGGCGTATCTGATATCGGGATCTGACGGCGACGGAGAGAGGATCAAGAGGCTCCTGCGGGCGATTTATCATCCGAGGAATCAGTATCTCTTGCACTTGGACAAGGCGGCTCGCGATGCCGAGAGGATAAGTCTTGGATTACACGCGCAGTCGGTGCCTGTTTTTGCAGCGGCTGGAAATGTCAATGTGATTGGAAAGGCAGATTTCGTGACTTACAGAGGACCGACGGCCATAGCTTCTACGCTTCATGCAGCCGCGCTTTTGCTGAGATATAGTAGAAATTGGGACTGGTTTATTAACCTTAGCGCCTCCGACTATCCTTTAATTACTCAGGACGATTTGCTTCACGTATTCTCCTATCTGCCAAGGGATCTGAACTTTATCGAACATTCGAGTGACATTGGATGGAAAGAGTATCAAAGGATTAAACCGATCATAATTGACCCTGGGCTTGCAATGTTAGGACAGAGTCAAATATTCTATGCTGCTCAAAAGCGAATGGTGCCAGATGCCTATAAGATCTTTACAGGTTCAGCATTTGTTGTCCTGAGTCGTAAATTTATGGAATATTGCATTCTTGGATGGGATAATCTACCACGGACAGTTCTGATTTATAGTGCAAACAGTCTATTGTCGGAAGAGGCATACTTTCAGACAGTTATTTGTAATTCCCAAGAATTCCGAAACACAACAGTTAATAATGATCTACGGTATGTAGCATGGGATAACCCCCCCAAACCAGAGCCATATTATCTTAACTTAACTGATTACAAGAAGATGATGCAGAGCGGTGCTGCTTTTGCAAGGCGGTTTCGGGAAGATGATCCAATTCTTGATCAGATTGATAGAGTAGTTCTGCATCGCCAAAATGAGTGGGTTACTCCTGGAGGTTGGTGTTTGGGCAAGTCCAACAAAAAGAAAGATCCCTGTTCTGTATGGGGTGATGGTAGCATTCTCAAGCCAGGGTCACGTGCTAAGGTGTTTGAGAAATCACTATTGAGGCTCCTTGCTAATGAGACTTTTCGATCTAAACAATGTAAAATTGAATAGGAAGATTTCTCCAAAACATGTGACATTATATCGAGTGAAGGCCATCCTTGGTTGGACTAGTCCACAGGCAAATGCTTTTTCATTGCCCGGCAGCATCTCAACCATTTGCAAAATTGGCTGCTGCAGAAAGGAGCTTTTGTCCCTCCAGAGAAGTTGCATATCTGAAGTACTAAATGAACAACTTCAGGGCCCAGGATAGTAGCTTACTGTCCTTCAGTTTAAAAAATTTCTTTCTGGGCCACGGGATGAAGCTGTCTACTGATAAACTCCACTTCATGGAGCTGCTGTTGGGGCTTGTCGCAGTTGTTTCTGATTTTGTATCGGTTCTGTTAATCTTAACAAAACCTATTTGGTGGGTAATTCTTTATAACTTTGAGCACATGTTTCTAAATTTGATTCATAGTGAAGCGTTTGAGTCCTTGATCTTGGAAAATTAGAAAGGGAAAAGTTTGATGGGACTTGCAGGGTCCATTCTGTCTAAAATAAATTTTGTTCCTTGCAGTAAGGTCTCACAAGGATTGTGAGGTAGCTTTCCATTTATTTATTTAATTTATGCCAACGTTGAATCTATTCAAGTATGATATTAGTCACAATTCATAGAGTTTACAAATACCGTCGGCTGCCCAATTTATCAGATTGTATGCGGGACAGCAATCTGTCTTCCAGTTGCAGATGTTCTCAATTTCCTGTTGAGGGGGCTAACTTAGAAAGAGTTACCTGAAGTCATTCATGAGCAGAGATCAGTTCATATATTTGTGCACTTGTAGCTGGCTGGAAAACTCCAGTGCTACAAGCTTTGTAAGGTTGACAGTTGCAACTGTAAGAATTAATCTCTCTTTACCAATTTACTGCTCTCTCCAGATTTGAGCATATCTTATGGAATCAGCGATCCTTGAGTTGCTGCTATATGTAGTTTATTTGTATGCTATTCTTTGCTTCTAATTATAGGTAAAGAGTCCTGGATATCTCCAGGTTCATTCAG

Ace file of the UniGene sp_v3.0_unigene34411

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb\|CAC01824.1\| putative protein [Arabidopsis thaliana] gb\|AAL14395.1\| AT5g15050/F2G14_170 [Arabidopsis thaliana] gb\|AAM63425.1\| putative glycosylation enzym	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Acetylglucosaminyltransferase, putative	-	-	4.113e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein xylosyltransferase.	EC:2.4.2.26	-	2.495e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	2.495e-29	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	2.495e-29	%
Sma3	Metabolic pathways	01100	2.495e-29	%

Source	Gene names
Sma3	109N23.3; AT4g03340; AT4g27480; At1g03520; At1g53100; At1g71070; At2g37580; At2g37585; At3g03690; At3g15350; At3g24040; At4g03340; At5g15050; At5g39990; B1015E06.23; BGGP; F23N20.6; F27G19.80; F2G14_170; F4C21.27; F8L10.4; GSVIVT00003832001; GSVIVT0001688

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine	GO:0018153	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Protein of unknown function DUF674	IPR007750	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15050.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr5:4871820-4873454 REVERSE LENGTH=434	59%
RefSeq	Arabidopsis thaliana	NP_197009.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002324028.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA08

Fln msg:

Fln protein: MGDHTSGRQAQFQSSAMRKLQGFALTERKWLLPLVASSLISILLIVAALVRSEDSRRPEVPPRKVIFEFESSVDGMPAAPRLAYLISGSDGDGERIKRLLRAIYHPRNQYLLHLDKAARDAERISLGLHAQSVPVFAAAGNVNVIGKADFVTYRGPTAIASTLHAAALLLRYSRNWDWFINLSASDYPLITQDDLLHVFSYLPRDLNFIEHSSDIGWKEYQRIKPIIIDPGLAMLGQSQIFYAAQKRMVPDAYKIFTGSAFVVLSRKFMEYCILGWDNLPRTVLIYSANSLLSEEAYFQTVICNSQEFRNTTVNNDLRYVAWDNPPKPEPYYLNLTDYKKMMQSGAAFARRFREDDPILDQIDRVVLHRQNEWVTPGGWCLGKSNKKKDPCSVWGDGSILKPGSRAKVFEKSLLRLLANETFRSKQCKIE*

Protein Length: 432

Fln nts: _-_ATGGGGGATCACACCAGTGGACGCCAAGCTCAATTCCAATCCAGCGCAATGCGGAAGCTGCAGGGCTTCGCACTCACAGAGCGCAAATGGCTTCTCCCTTTGGTGGCGAGCTCGCTGATATCGATCTTGTTGATTGTAGCTGCCCTGGTTCGATCCGAAGACTCCCGCCGCCCGGAGGTGCCACCGCGCAAGGTCATATTCGAATTCGAATCCAGTGTGGACGGGATGCCTGCTGCGCCCAGACTGGCGTATCTGATATCGGGATCTGACGGCGACGGAGAGAGGATCAAGAGGCTCCTGCGGGCGATTTATCATCCGAGGAATCAGTATCTCTTGCACTTGGACAAGGCGGCTCGCGATGCCGAGAGGATAAGTCTTGGATTACACGCGCAGTCGGTGCCTGTTTTTGCAGCGGCTGGAAATGTCAATGTGATTGGAAAGGCAGATTTCGTGACTTACAGAGGACCGACGGCCATAGCTTCTACGCTTCATGCAGCCGCGCTTTTGCTGAGATATAGTAGAAATTGGGACTGGTTTATTAACCTTAGCGCCTCCGACTATCCTTTAATTACTCAGGACGATTTGCTTCACGTATTCTCCTATCTGCCAAGGGATCTGAACTTTATCGAACATTCGAGTGACATTGGATGGAAAGAGTATCAAAGGATTAAACCGATCATAATTGACCCTGGGCTTGCAATGTTAGGACAGAGTCAAATATTCTATGCTGCTCAAAAGCGAATGGTGCCAGATGCCTATAAGATCTTTACAGGTTCAGCATTTGTTGTCCTGAGTCGTAAATTTATGGAATATTGCATTCTTGGATGGGATAATCTACCACGGACAGTTCTGATTTATAGTGCAAACAGTCTATTGTCGGAAGAGGCATACTTTCAGACAGTTATTTGTAATTCCCAAGAATTCCGAAACACAACAGTTAATAATGATCTACGGTATGTAGCATGGGATAACCCCCCCAAACCAGAGCCATATTATCTTAACTTAACTGATTACAAGAAGATGATGCAGAGCGGTGCTGCTTTTGCAAGGCGGTTTCGGGAAGATGATCCAATTCTTGATCAGATTGATAGAGTAGTTCTGCATCGCCAAAATGAGTGGGTTACTCCTGGAGGTTGGTGTTTGGGCAAGTCCAACAAAAAGAAAGATCCCTGTTCTGTATGGGGTGATGGTAGCATTCTCAAGCCAGGGTCACGTGCTAAGGTGTTTGAGAAATCACTATTGAGGCTCCTTGCTAATGAGACTTTTCGATCTAAACAATGTAAAATTGAATAG___GAAGATTTCTCCAAAACATGTGACATTATATCGAGTGAAGGCCATCCTTGGTTGGACTAGTCCACAGGCAAATGCTTTTTCATTGCCCGGCAGCATCTCAACCATTTGCAAAATTGGCTGCTGCAGAAAGGAGCTTTTGTCCCTCCAGAGAAGTTGCATATCTGAAGTACTAAATGAACAACTTCAGGGCCCAGGATAGTAGCTTACTGTCCTTCAGTTTAAAAAATTTCTTTCTGGGCCACGGGATGAAGCTGTCTACTGATAAACTCCACTTCATGGAGCTGCTGTTGGGGCTTGTCGCAGTTGTTTCTGATTTTGTATCGGTTCTGTTAATCTTAACAAAACCTATTTGGTGGGTAATTCTTTATAACTTTGAGCACATGTTTCTAAATTTGATTCATAGTGAAGCGTTTGAGTCCTTGATCTTGGAAAATTAGAAAGGGAAAAGTTTGATGGGACTTGCAGGGTCCATTCTGTCTAAAATAAATTTTGTTCCTTGCAGTAAGGTCTCACAAGGATTGTGAGGTAGCTTTCCATTTATTTATTTAATTTATGCCAACGTTGAATCTATTCAAGTATGATATTAGTCACAATTCATAGAGTTTACAAATACCGTCGGCTGCCCAATTTATCAGATTGTATGCGGGACAGCAATCTGTCTTCCAGTTGCAGATGTTCTCAATTTCCTGTTGAGGGGGCTAACTTAGAAAGAGTTACCTGAAGTCATTCATGAGCAGAGATCAGTTCATATATTTGTGCACTTGTAGCTGGCTGGAAAACTCCAGTGCTACAAGCTTTGTAAGGTTGACAGTTGCAACTGTAAGAATTAATCTCTCTTTACCAATTTACTGCTCTCTCCAGATTTGAGCATATCTTATGGAATCAGCGATCCTTGAGTTGCTGCTATATGTAGTTTATTTGTATGCTATTCTTTGCTTCTAATTATAGGTAAAGAGTCCTGGATATCTCCAGGTTCATTCAG

Fln Alignment:

Contig34411___MRKLQGFALTERKWXXXXXXXXXXXXXXXXXXXXRSEDSRRPEVPPRKVIFEFESSV-DGMPAAPRLAYLISGSDGDGERIKRLLRAIYHPRNQYLLHLDKAARDAERISLGLHAQSVPVFAAAGNVNVIGKADFVTYRGPTAIASTLHAAALLLRYSRNWDWFINLSASDYPLITQDDLLHVFSYLPRDLNFIEHSSDIGWKEYQRIKPIIIDPGLAMLGQSQIFYAAQKRMVPDAYKIFTGSAFVVLSRKFMEYCILGWDNLPRTVLIYSANSLLSEEAYFQTVICNSQEFRNTTVNNDLRYVAWDNPPKPEPYYLNLTDYKKMMQSGAAFARRFREDDPILDQIDRVVLHRQNEWVTPGGWCLGKSNKKKDPCSVWGDGSILKPGSRAKVFEKSLLRLLANETFRSKQCKIE
D5AA08_______________MRKLQGFALTERKWLLPLVASSLISILLVVAALVRSGDSRRPEGPPSKLKFEFESGLTDRMPAAPRLAYLISGSEGDGQRIKRLLGAIYHPRNQYLLHLDKAARDAERISLGLYVQSVPVFAAAGNVNVIGKADFVSYRGPTAIASTLHAAALLLRYSRNWDWFINLSPSDYPLITQDDLLHVFSYLPRDLNFIEHSSDIGWKEYHRIKPIIIDPGLSMLGRSQIFYATQKRMVPNAYKTFTGSAFVVLSRNFMEYCILGWDNLPRTVLIYSANSLLSEEAYFQTVICNAQEFRNTTVNNDLRYVAWDNPPKPEPYYLNSTDYKKMMQSGAAFARQFREDDPILDRIDRVVLHRQHEWVTPGGWCLGKSNKKKDPCSVWGDISILKPGSRAKVFEKSLSRLLANETFRSNQCKLE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
440	20			80	0.995493
582	14		85		0.993533
584		85		14	0.993533
631		12		87	0.992554
632	12	87			0.992554
634	87			12	0.992554
635	87	12			0.992554
636		87		12	0.992554
1149	50		25		0.995533
1630		11		88	0.923564
1957	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1829	1841	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain