SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34316

Length: 673 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene34316 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS	-	-	5.99994e-41	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Histone H2B	-	-	2.141e-33	-

Source	Gene names
Sma3	ABE2; At1g07790; At2g28720; At2g37470; At3g09480; At3g45980; At3g46030; At3g53650; At5g02570; At5g22880; At5g59910; CHLREDRAFT_100005; CHLREDRAFT_100008; CHLREDRAFT_100162; CHLREDRAFT_100236; CHLREDRAFT_100672; CHLREDRAFT_100722; CHLREDRAFT_102205; CHLRED

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	mitotic chromosome condensation	GO:0007076	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28720.1	Histone superfamily protein chr2:12327043-12327498 FORWARD LENGTH=151	75%
RefSeq	Arabidopsis thaliana	NP_180440.1	histone H2B [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002301712.1	histone 2 [Populus trichocarpa]	75%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
194		50		50	1.0
202		25	75		0.996473
633	87			12	0.992554
647			87	12	0.992554
648	87		12		0.992554
650	14	57		28	1.0
651		71	28		1.0
652	14	71			0.984337
653		50	16		1.0
655	16		16		0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
443	454	AGG AGG AGG AGG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain