SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34308

Length: 2013 nt

UniGene Fasta

>sp_v3.0_unigene34308
TCCTAGGCCCCACAGGCACCTCGAATTCCAAGGTCAATCCAATGGTAGTTATCATGACACTTTTACTGTAACCACAATTCAATAAGCATAGTAAGCAGAATATGCGCGTTATTTAATACAACAGGCGCTGGTTAAAGACGAAGACGAAAACGTAGAGAGGAAAGAGTCAGAAGAAAAGTCAGGTAAAGCTGTTTCGTCTGAGTTCCTCCGGTCGCGGACCTTTCAAATTCGCAGCACTTGTCATATGCTTTTGTTTTAAATTCTTCATTTTGAAACATTTTCGGACTCTTCTCCACGATCTTCGACGGTTTATGCGCAGCGCGGCTTAGGTTGATATTATAAGAAAACAGAAGGCCGAATTGGAAGCGGTTTAAAGAAGTAGTTTGCGAATTAATTTAAAGGATCAAGGTAGAACCATTTTAAATAATTTACGAAGGTTACAGAAGTTTCAGAAGCTTCCAAAAGGATTCAGAGGGATTTCTATAACCGGGACATGTCGTCCGCGGTAGCTTCTCAGTGGCGTGAAAAGGCTACCGGATTTTTTTCATCTTCTAGCATCAAGCTTAAACAGGCAAGTCAGACAGCAGGTGCATTTGTAGGAGAGGTTGCAAAGGATGCAGGATCTAGTGTTACAGAAGCTGCTGAGCGTGCTGGAACTGCATTCAGGACGCAATGGAGTCTTCTTCAGCAATCTAGACAACAGCAGTCATCACAGTTATCACATGATTCTATGCAGGAGCGTATTCTTTCTGCTGCAGCTTCAACAAGTACACTACTGAAGAGGAGCATATCAGAAACAAAGGAAAAGGTTGCTACTGGAAAAGTCATTGTTGGAGAGGCTGCCAAGAAAACTGCACAGAAAAGCAAAAGTATATTGACAAATATTGAGAGATGGCAAAAGGGAGTGGCAAGCAGTGACGTTTTTGGAGTGCCAATCGAGATTGTTGTACACAGACAGAATGCTTCAAGACCTATTCCTGAAATATTAATAAAATGTGCTGATTACATTGTGCTAACAGGACTCACTTCAGAATACATTTTCAAGTCCGAAGGAGATGGAAGAGTTATTCAAAACCTAGTTTCTTTGTATAATGAAGATTCGAAGGCACCATTACCTGAAGGTGTGAGTCCGATTGATGTTGCTGCTTTGCTTAAGATTTATCTTCTAAGTCTTCCTGAGCCCATTATTTCCTTTGACCTATATGATGAGATTAAAAATGCTAGAAGCAACGTACAGCAACTGAGAAACATTCTGAAAAAACTTTCGAGTGTGAACCATTCAACCCTGGAGTTCATAACTGCTTTACTTCTCCGGGTCAGCCAAAAATCTGCTCTCAACAAGATGGATGCTCATAGCCTTGCAGTTGAACTGGCTCCAACAATATTCTGGCAGAGGAGTGAAAGAAAATCCAATACTAGCGGACAGCAATTACCCTTATGGCACGCAGGCAGACTTTTTCGACTGAAGTCCTCATCACAGGATTCAGAGAGAAGTTTAAGTAGAACTTGGACAGGTAGACATGGTTTCTCTTCTCAAAATGGCAACAATAATCATCGAAGCAGTGATTTTGATGATTTGCGCGATCTCTATGAGGACGGGAACAGCTCAAGTGGAGGTTTGGATGTAGCATCACAGATTCCTCTGGATGATGGCGTTCCACCTGTTGATTATGTTATTGTGGAGGTTGTACAATGTTTAATTGAACGCCACAATGCAGTTTTCACAGATGCAAGTGAAACTGTGTGGCACTAATAGCTTTCCTTGTCTTGATCTGACAATTTGGAATAAATCTGTTTCAAATTCCTGTTCCTTATCGTAACATTTGGTCTTGTATTTAACAAGGATCCGCTATTTATTGTGACGTGTTTTTTGTGAATATGAGTCTACGTATAGCGATACTTGTTTTATTAGATGAATGTTAATGGTCACCAAATATTCTTTATGAGAAAAGGAAACGAAGAAGATACCATTTGCTCAAGGAGTGTGTTGCTTCATATTTGCATGACATGCAT

Ace file of the UniGene sp_v3.0_unigene34308

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00620, RhoGAP, RhoGAP domain	-	-	7.0e-34	33%
FL-Next	sp=Uncharacterized Rho GTPase-activating protein At5g61530; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Gene names
Sma3	At5g61530; GSVIVT00005216001; GSVIVT00013530001; GSVIVT00016993001; GSVIVT00016999001; K11J9.10; Os07g0486500; OsI_26031; OsJ_24279; P0683C09.118; POPTRDRAFT_923519; RCOM_1501010;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rho GTPase-activating protein domain	IPR000198	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61530.1	small G protein family protein / RhoGAP family protein chr5:24742630-24744586 FORWARD LENGTH=376	53%
RefSeq	Arabidopsis thaliana	NP_568935.1	uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002328831.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E875

Fln msg: your sequence is longer than subject: 420 - 376

Fln protein: MSSAVASQWREKATGFFSSSSIKLKQASQTAGAFVGEVAKDAGSSVTEAAERAGTAFRTQWSLLQQSRQQQSSQLSHDSMQERILSAAASTSTLLKRSISETKEKVATGKVIVGEAAKKTAQKSKSILTNIERWQKGVASSDVFGVPIEIVVHRQNASRPIPEILIKCADYIVLTGLTSEYIFKSEGDGRVIQNLVSLYNEDSKAPLPEGVSPIDVAALLKIYLLSLPEPIISFDLYDEIKNARSNVQQLRNILKKLSSVNHSTLEFITALLLRVSQKSALNKMDAHSLAVELAPTIFWQRSERKSNTSGQQLPLWHAGRLFRLKSSSQDSERSLSRTWTGRHGFSSQNGNNNHRSSDFDDLRDLYEDGNSSSGGLDVASQIPLDDGVPPVDYVIVEVVQCLIERHNAVFTDASETVWH*

Protein Length: 421

Fln nts: TCCTAGGCCCCACAGGCACCTCGAATTCCAAGGTCAATCCAATGGTAGTTATCATGACACTTTTACTGTAACCACAATTCAATAAGCATAGTAAGCAGAATATGCGCGTTATTTAATACAACAGGCGCTGGTTAAAGACGAAGACGAAAACGTAGAGAGGAAAGAGTCAGAAGAAAAGTCAGGTAAAGCTGTTTCGTCTGAGTTCCTCCGGTCGCGGACCTTTCAAATTCGCAGCACTTGTCATATGCTTTTGTTTTAAATTCTTCATTTTGAAACATTTTCGGACTCTTCTCCACGATCTTCGACGGTTTATGCGCAGCGCGGCTTAGGTTGATATTATAAGAAAACAGAAGGCCGAATTGGAAGCGGTTTAAAGAAGTAGTTTGCGAATTAATTTAAAGGATCAAGGTAGAACCATTTTAAATAATTTACGAAGGTTACAGAAGTTTCAGAAGCTTCCAAAAGGATTCAGAGGGATTTCTATAACCGGGAC_-_ATGTCGTCCGCGGTAGCTTCTCAGTGGCGTGAAAAGGCTACCGGATTTTTTTCATCTTCTAGCATCAAGCTTAAACAGGCAAGTCAGACAGCAGGTGCATTTGTAGGAGAGGTTGCAAAGGATGCAGGATCTAGTGTTACAGAAGCTGCTGAGCGTGCTGGAACTGCATTCAGGACGCAATGGAGTCTTCTTCAGCAATCTAGACAACAGCAGTCATCACAGTTATCACATGATTCTATGCAGGAGCGTATTCTTTCTGCTGCAGCTTCAACAAGTACACTACTGAAGAGGAGCATATCAGAAACAAAGGAAAAGGTTGCTACTGGAAAAGTCATTGTTGGAGAGGCTGCCAAGAAAACTGCACAGAAAAGCAAAAGTATATTGACAAATATTGAGAGATGGCAAAAGGGAGTGGCAAGCAGTGACGTTTTTGGAGTGCCAATCGAGATTGTTGTACACAGACAGAATGCTTCAAGACCTATTCCTGAAATATTAATAAAATGTGCTGATTACATTGTGCTAACAGGACTCACTTCAGAATACATTTTCAAGTCCGAAGGAGATGGAAGAGTTATTCAAAACCTAGTTTCTTTGTATAATGAAGATTCGAAGGCACCATTACCTGAAGGTGTGAGTCCGATTGATGTTGCTGCTTTGCTTAAGATTTATCTTCTAAGTCTTCCTGAGCCCATTATTTCCTTTGACCTATATGATGAGATTAAAAATGCTAGAAGCAACGTACAGCAACTGAGAAACATTCTGAAAAAACTTTCGAGTGTGAACCATTCAACCCTGGAGTTCATAACTGCTTTACTTCTCCGGGTCAGCCAAAAATCTGCTCTCAACAAGATGGATGCTCATAGCCTTGCAGTTGAACTGGCTCCAACAATATTCTGGCAGAGGAGTGAAAGAAAATCCAATACTAGCGGACAGCAATTACCCTTATGGCACGCAGGCAGACTTTTTCGACTGAAGTCCTCATCACAGGATTCAGAGAGAAGTTTAAGTAGAACTTGGACAGGTAGACATGGTTTCTCTTCTCAAAATGGCAACAATAATCATCGAAGCAGTGATTTTGATGATTTGCGCGATCTCTATGAGGACGGGAACAGCTCAAGTGGAGGTTTGGATGTAGCATCACAGATTCCTCTGGATGATGGCGTTCCACCTGTTGATTATGTTATTGTGGAGGTTGTACAATGTTTAATTGAACGCCACAATGCAGTTTTCACAGATGCAAGTGAAACTGTGTGGCACTAA___TAGCTTTCCTTGTCTTGATCTGACAATTTGGAATAAATCTGTTTCAAATTCCTGTTCCTTATCGTAACATTTGGTCTTGTATTTAACAAGGATCCGCTATTTATTGTGACGTGTTTTTTGTGAATATGAGTCTACGTATAGCGATACTTGTTTTATTAGATGAATGTTAATGGTCACCAAATATTCTTTATGAGAAAAGGAAACGAAGAAGATACCATTTGCTCAAGGAGTGTGTTGCTTCATATTTGCATGACATGCAT

Fln Alignment:

Contig34308___MSSAVASQWREKATGFFSSSSIKLKQASQTAGAFVGEVAKDAGSSVTEAAERAGTAFRTXXXXXXXXXXXXXXXXXXXXXXERILSAAASTSTLLKRSISETKEKVATGKVIVGEAAKKTAQKSKSILTNIERWQKGVASSDVFGVPIEIVVHRQNASRPIPEILIKCADYIVLTGLTSEYIFKSEGDGRVIQNLVSLYNEDSKAPLPEGVSPIDVAALLKIYLLSLPEPIISFDLYDEIKNARSNVQQLRNILKKLSSVNHSTLEFITALLLRVSQKSALNKMDAHSLAVELAPTIFWQRSERKSNTSGQQLPLWHAGRLFRLKXXXXXXXXXXXRTWTGRHGFSSQNGNNNHRSSDFDDLRDLYEDGNSSSGGLDVASQIPLDDGXXXXXXXXXXXXQCLIERHNAVFTDASETVW
Q3E875_______________MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQ-------EHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES----------------------------YREYWRRPSRSPKKSNDFETATPWDLLSDEGE-------GPDASSSIPLDD-IARVDFGAVEVVQCLIEHHNAIFTDAAETVW

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
777	80		20		0.995493
1392	33		66		0.997452
1393			66	33	0.997452
1394		66	33		0.997452
1399	33		66		0.997452
1400	66			33	0.997452
1401	33		66		0.997452
1403		33	66		0.997452
1649	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain