SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34270

Length: 1211 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34270

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SXF6_VITVI	-	-	0.0	67%
FL-Next	sp=Pectinesterase 31; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Pectinesterase	-	-	7.051e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	3.64338e-44	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	3.64338e-44	%
Sma3	Starch and sucrose metabolism	00500	3.64338e-44	%
Sma3	Metabolic pathways	01100	3.64338e-44	%

Source	Gene names
Sma3	ARATH31; ARATH53; At3g29090; At5g19730; GSVIVT00016652001; GSVIVT00021009001; GSVIVT00037572001; LOC_Os10g26680; MXE2.5; MtrDRAFT_AC155888g12v2; MtrDRAFT_AC157891g21v2; OJ1087_C03.4; OSJNBa0060A14.17; OSJNBa0072I06.24; Os01g0743200; Os05g0521600; Os07g060

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G29090.1	PME31, ATPME31 pectin methylesterase 31 chr3:11073804-11075335 FORWARD LENGTH=317	67%
RefSeq	Arabidopsis thaliana	NP_566842.1	pectinesterase 31 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002305315.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LVQ0

Fln msg:

Fln protein: MAVTKVVAQDGSAEYKDVQAAINAVPVGNKQRVVIEVKSGVYRQPLYIPKTKNLITLRGSSSAEETVLTWDNTANKPIKHHQDQSVIGTGTFACGSVIVEGSDFIAEGITFENSAPEGSGQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHIHCKAAGFVTAQGRRSRDVPTAYVFLRCVITGNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFYEYKCFGPGSNTSGRVKWARQLNDGEIAQYVSQTFIDPPDKKSWLVNKMSMKLPVTA*

Protein Length: 319

Fln nts: ATGGGGGCAAAGCTCGGTAGTGTGTTTCAAGATTAATTGAATCTTACAGTACCTAAAGCTGCAGTT_-_ATGGCTGTTACAAAGGTAGTTGCTCAGGATGGTAGCGCCGAGTACAAGGATGTCCAAGCTGCCATTAACGCTGTCCCTGTTGGCAACAAGCAACGAGTAGTAATCGAGGTTAAGTCTGGAGTTTACAGGCAACCCCTCTATATTCCCAAAACGAAGAATCTCATCACACTCCGAGGATCCTCTAGTGCAGAAGAAACTGTTTTAACATGGGACAACACAGCCAATAAGCCCATTAAACATCATCAGGATCAGAGCGTGATCGGCACTGGTACGTTTGCCTGCGGCTCTGTGATTGTAGAAGGATCGGATTTCATTGCTGAGGGGATTACATTTGAAAACTCAGCGCCTGAGGGATCGGGGCAAGCTGTTGCTATCAGAGTAACAGGAGACAGATGTGCATTCTACACTTGCAGATTTCTCGGCTGGCAGGACACTGCGTATCTACACCATGGAAAGCACTACCTGAGAGATTGCTACATCGAAGGCAGCGTCGACTTCATCTTTGGAGATGCAACGGCATTGTTAGAACACTGCCACATTCACTGCAAGGCTGCAGGGTTTGTCACCGCACAGGGCCGTAGATCTCGGGATGTTCCAACGGCTTATGTGTTTCTCAGGTGTGTTATTACTGGTAACGGGCAAGGCAATTATGCATATCTGGGGCGCCCATGGCAGCCATTCGCCAGAGTTGTATACGCTTACACGTGGATGGATGCTTGCATCAAGCCAGAGGGTTGGCATAACTGGGATTCGCAGGAGAAAGAAGGGACTGCATCCTTCTATGAATACAAGTGTTTTGGGCCAGGTAGTAATACGTCTGGGCGAGTGAAGTGGGCTAGGCAACTGAACGATGGTGAGATTGCTCAGTATGTAAGTCAGACTTTCATCGACCCACCCGATAAGAAATCGTGGCTGGTAAACAAGATGTCAATGAAATTACCAGTAACAGCCTAG___CGAAACTATGAGGCTATCACCGTTGAGGGGAGGGATCCTCCTATCCGCAGAGTTATTGTTCCAGGTTAAGTAGAGTGTTACTGTGCTTTCGTCTAGAGTGTGATCTCGTTTTTCGATAATAATGTCCCTGGACATACAGAACAAAGGTTTTAAGACAGGTTTATTTGAAATAAAATAAATATTTTGGTAGC

Fln Alignment:

Contig34270___QDGSAEYKDVQAAINAVPVGNKQRVVIEVKSGVYRQPLYIPKTKNLITLRGSSSAEETVLTWDNTANKPIKHHQDQSVIGTGTFACGSVIVEGSDFIAEGITFENSAPEGSGQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHIHCKAAGFVTAQGRRSRDVPTAYVFLRCVITGNGQGNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFYEYKCFGPGSNTSGRVKWARQLNDGEIAQYVSQTFIDPPDKKSWLVNKMSMKLPVTA
Q9LVQ0_______________QDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISP-EITVLTWNNTASK-IEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPWSRELMDDEAGHFVHHSFVDPEQDRPWLCLRMGVKTPYSA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1036	66		33		1.0
1039	83	16			0.999991
1072	20		80		1.0
1113		73		26	1.0
1129		4		85	0.999726
1163	66	33			1.0
1183		14		85	0.993533
1192			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain