SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34168

Length: 1392 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34168

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group]	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Isoamyl acetate-hydrolyzing esterase, putative	-	-	6.311e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	2.204e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	2.204e-09	%
Sma3	Bisphenol degradation	00363	2.204e-09	%
Sma3	Glycerophospholipid metabolism	00564	2.204e-09	%
Sma3	Toluene degradation	00623	2.204e-09	%
Sma3	Aminobenzoate degradation	00627	2.204e-09	%
Sma3	Retinol metabolism	00830	2.204e-09	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	2.204e-09	%

Source	Gene names
Sma3	At2g38180; At3g11210; At5g45920; At5g62930; CPRD49; F11B9.13; F16M14.11; F9F8.1; GSVIVT00016066001; GSVIVT00021507001; GSVIVT00029278001; K15I22.12; LOC_Os10g33690; LOC_Os11g48070; MQB2.25; OSJNBa0026O12.11; OSJNBa0038J17.26; OSJNBa0085L11.34; Os01g021420

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002309140.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg:

Fln protein: MAGHQRPLFVLFGASLTENAFQPGGWGASLADYYTRKADVLVRGYTGWNTRRAIAVLEKFFPKDHPSQPALVVVFFGSNDAAFPLPSGMGQSVPITEYKANLRQICAHIKGLSDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSDGFHLSPVGNQILLEELLKVLKNASWVPNLHWEYLPNDFDEPSIYDYIHPSTELASNDVQQSAV*

Protein Length: 257

Fln nts: ATGGGGAAATAGAGTGATTGGTATCGGGATTCGGAGGGAAGCGGAGGAGCGAGCATAGCGTTAGGGA_-_ATGGCAGGGCATCAGCGTCCATTGTTCGTGCTGTTCGGAGCATCTCTGACTGAAAATGCCTTCCAACCGGGAGGCTGGGGTGCCAGTTTGGCAGATTACTACACTCGGAAGGCTGATGTTTTGGTTAGGGGATACACTGGATGGAATACTCGTCGAGCTATTGCTGTATTGGAAAAGTTTTTCCCAAAGGATCATCCTTCTCAGCCTGCCTTAGTAGTAGTATTCTTTGGATCCAATGATGCTGCCTTTCCTCTTCCTAGTGGAATGGGTCAAAGTGTGCCAATCACAGAGTACAAAGCAAATCTTCGACAAATATGTGCACATATCAAGGGTCTTTCAGATACATCTCGTGTGGTTCTTGTAACTCCTTCACCTGTGTTTGATGAAGCACGCCGAGCTTATGCCAGACGCAAGTGGGGTAGCCTTGCTGGTAATTACCCAGATCGTACAAATCAACGTGCGCAGGAGTATGCTGAAGCCTGTATAGAAGTGGCAAAGGAGATGGATGTCGGCGTGGTAGATCTCTGGAATGCTATTCAAAGAACAAAGGACTGGGAGACAGAATGTCTGAGTGATGGGTTCCATTTGAGCCCTGTTGGCAACCAAATTCTGCTTGAGGAGCTTTTGAAGGTATTGAAGAATGCTAGTTGGGTTCCAAATTTGCATTGGGAGTACCTGCCAAATGACTTTGATGAGCCTTCCATATATGATTATATACACCCATCTACAGAATTGGCATCAAATGATGTCCAACAATCTGCAGTATAG___TGAATTGAGTGTATATGGAGGTTTTAGAATCTTTCTCAAACTATGCACAGTTTTCAATAATTATTGAGGCTTCTGTTATGATTTATCTTTATGTGGTCATTAGTAAGAAAGTTGTTAGTAACAATAAGTAAATGATACAAGTCAAATGTGGACTATGGCTATGGTACAAAGGCCTAGTGTATTTTTCTGGTTGGGGGACCTATTTAAGCTATACCTGTCTAAATGCAAGTCCTCCATCCACCATTTGAGTGACATATAATAAAGAGCATGGCAGGCTAAGCTCTTATAAAAAATTGTAATTGACAGTTCTCACAAGAAACTCAGAACTGAAAATTTCCAATTCATGCATGTTAATCACGATTTAGAAGCCAATAAGAAGGTCAAATATTAAGGTGGCTGCTGCAATAACATCAATATGCATTTTTCATTTTTATCCAAAGAATGGATACATGCAGTTCAGTTGAGATGCACAGTACGCAGCAAGCTGTACAGCCAAACAACTGAGTATCTACTTTTGCACTATCTGATGCAGAGTATAATGCATAATATATTTCTAC

Fln Alignment:

Contig34168___QRPLFVLFGASLTENAFQPGGWGASLADYYTRKADVLVRGYTGWNTRRAIAVLEKFFPKDHPSQPALVVVFFGSNDAAFPLPSGMGQSVPITEYKANLRQICAHIKGLSDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSDGFHLSPVGNQILLEELLKVLKNASWVPNLHWEYLPNDFDEPSIYDYI
B8LNG4_______________RRPLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFPKDAIEQPSLIIVYFGGNDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIV-----RTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSVIVVEEILKVLKEAEWEPSLHWKSIPAEFGESSPYDVV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
580		80		20	0.995493
796	85	14			0.993533
803			85	14	0.993533
826		14		85	0.993533
924			12	87	0.992554
1237	10		90		0.90298
1268	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain