SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34132

Length: 1292 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34132

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	3.0e-19	31%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	69%

Source	Gene names
Sma3	At HRD3; At1g18260; At1g73570; CHLREDRAFT_129691; F6D5.4; GSVIVT00017845001; Gm sel-1; ISP11; LOC_Os03g15350; MICPUN_66396; Os03g0259300; OsI_10819; OsJ_10203; PHYPADRAFT_11530; PHYPADRAFT_117372; PHYPADRAFT_204384; POPTRDRAFT_569730; POPTRDRAFT_575012; R

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18260.1	HCP-like superfamily protein chr1:6279047-6282008 REVERSE LENGTH=678	66%
RefSeq	Arabidopsis thaliana	NP_564049.1	Hr.3 like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002322109.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SWV9

Fln msg: your sequence is shorter than subject: 326 - 681

Fln protein: EEFFKKAAENDDVNGHGNYNLGVLYLKGLGVKKDIKVASRYFITAANAGQPKAFYQLAKMFHKGIGLKKDLKMATTLYKLVAERGPWGSLLRWALECYLKGQTGRALLLYSRVAELGYEVAQSNAAWVLDKFGEYDICIGKSGFCSEVERHQRGHTLWWHASEQGNEHAALLIGDAYYYGRGTERDFERAAEAYMHAHSQANAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALQTDSHAKLPVMLALLSVWIRKNYGDSCLVILIDSLPGMLPKLGNWLKKTLIDDGNVTLVTLFACLLTVLYLRDRQRRMAAQVVPQPQVDNN*

Protein Length: 327

Fln nts: GAAGAATTCTTCAAGAAGGCAGCAGAAAATGACGACGTCAATGGGCATGGGAATTACAATCTGGGAGTGTTGTACTTGAAAGGATTGGGCGTGAAGAAAGACATCAAGGTAGCTTCTAGGTATTTTATAACAGCAGCCAATGCTGGTCAACCAAAGGCATTCTATCAATTGGCAAAAATGTTCCATAAAGGCATTGGTCTGAAAAAGGATTTGAAGATGGCCACTACATTGTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTAAGATGGGCTTTAGAGTGTTACTTGAAAGGCCAAACCGGCAGAGCCCTGCTATTGTACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAATGCTGCATGGGTTCTTGACAAGTTTGGGGAATATGATATATGCATAGGAAAGTCAGGTTTCTGCAGTGAAGTTGAACGACATCAACGTGGACACACCCTTTGGTGGCATGCATCAGAGCAGGGTAATGAGCATGCGGCACTTTTAATTGGGGATGCCTATTATTATGGCAGGGGTACTGAAAGAGATTTTGAGCGTGCTGCAGAGGCTTACATGCATGCTCATTCCCAGGCAAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACACGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCTTTGCAGACCGATTCACATGCCAAGTTGCCTGTGATGCTTGCTCTTCTGAGTGTATGGATTAGAAAGAACTATGGTGACAGCTGCTTGGTGATATTAATCGATTCTCTCCCTGGCATGCTTCCCAAATTAGGAAACTGGTTGAAGAAGACCCTTATTGATGATGGCAACGTGACTTTAGTTACATTGTTTGCCTGCCTTTTGACAGTCTTGTATCTTCGTGATAGGCAAAGGCGAATGGCTGCTCAAGTAGTTCCTCAGCCTCAAGTAGATAATAATTGA___TAATCATGACTTTCTGAGGTCAGTCTCGTCTAATTCAATGTTCTGCTGAACATGAACATTAAGAATCATGAGTGGGCATATAGTATTTTCTTGTACATGGGTTCTTTGGCCTGAGATGACTTCCTGTAGTTTGAGTTTTGTCGTAGAGTCATTGGGGTCATCTGACTATGTGACCTAATTCGAGATCATATAGGGCCATGCGAAGTAATTGCTGAACAAATACCTAGTTTTTTGGATGGAAGATATTTCACCTTTTTCTTTGGCTAAAATGCTTCCTTCCATTGAAGTATCAAAATAATACAGTGCATTTTACT

Fln Alignment:

Contig34132___EEFFKKAAENDDVNGHXXXXXXXXXXXXXXXXKDIKVASRYFITAANAGQPKAFYQLAKMFHKGIGLKKDLKMATTLYKLVAERGPWGSLLRWALECYLKGQTGRALLLYSRVAELGYEVAQSNAAWVLDKFGEYDICIGKSGFCSEVERHQRGHTLWWHASEQGNEHAALLIGDAYYYGRGTERDFERAAEAYMHAHSQANAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALQTDSHAKLPVMLALLSVWIRKNYGDSCLVILIDSLPGMLPKLGNWLKKTLIDDGNVTLVTLFACLLTVLYLRDRQRRMAAQV----VPQPQVD
B9SWV9_______________KEYFEKAAHNEEAGGHYNLGVMYLKGIGVK--RDVKLACKYFIVAANAGQPKAFYQLAKMFHTGVGLKKDLVMATALYKLVAERGPWSTLSRWALESYLKGDVGKAFLLYARMAEMGYEIAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDPAAKLPVTLALTSLWVRRNYADSFLVNLIDSLPGVYPKVEAWVENVILEEGNATILTLFVCLLTVLYLRERQRRHAGGVGEAAVPQQPLE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
662		16		83	0.994512
672		83		16	0.994512
741	16			83	0.994512
784		16		83	0.994512
1004		22		77	0.999999
1005		77		22	0.999999
1023			88	11	0.923564
1080			25	75	1.0
1082	12	87			0.992554
1153	37	62			1.0
1159		62		37	1.0
1178	28		71		1.0
1292	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain