SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34129

Length: 1742 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34129

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase	-	-	9.0e-28	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	0.0	-
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein chr3:3511101-3512899 REVERSE LENGTH=256	64%
RefSeq	Arabidopsis thaliana	NP_566387.1	GDSL esterase/lipase CPRD49 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002311219.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg: your sequence is longer than subject: 312 - 256

Fln protein: MVLIDTESLLVLAHIYYIYINIFSQDSVCIWTCTSSIVASFQLRKLSLDSRQKGEKMIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTDSRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSIIVVEEILKVLKEAEWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD*

Protein Length: 313

Fln nts: ACATGGGATGGGTAGTTGTTAATTTAGGATTTCAATGATATCGACTCTGCTATTTCAAAATCTGCATATGTCAAGAATCATTTATAACCATGACAAAGTAATCTCATAAGTCAAACAGAACCTGTCAAGATCGTGACAACGTAACCTCAGAGGTGAGACACCAGCTTTTGGAGCGAAGTAGGTGCCATTCACTTATCAGAGGACGAACCAAGTAACTAACATCGCCCCACGCATTTATTGTTGAGCTGTGTTTCTTTTATTGTCTACCTGAAAACTTTTTTTG_-_ATGGTGCTCATTGATACGGAATCTCTCCTTGTACTTGCACATATATATTATATATATATAAACATATTTTCCCAAGACTCAGTGTGCATTTGGACCTGTACATCCTCGATCGTGGCCAGCTTTCAACTCCGAAAGCTGAGCTTGGATTCACGGCAGAAAGGAGAGAAAATGATCGGACCACGTCGGCCATTGTTTGTGCTGTTTGGTTCCTCCATTGTGCAGTACAGCTTTGCCAATGGTGGCTGGGGAGCTCATCTTGCTGACATCTATGCACGCAAGGCAGATATTCTGGTACGAGGGTATAGTTCGTGGAACTCCAGGCGGGCACTGCAAGTGTTAGATCAAATATTTCCCAAGGGTGATAGTCAACAGCCCTCATTAATTATTGTGTACTTTGGTGGAAATGATTCTATGGGGCCCCACCCATCAGGCTTAGGTCCTCATGTACCTCTTTCTGAATACATTGACAACATGAGAAAAATAGCAACTTATCTTAAGGCCCTCTCAGAATCAACACGGCTAATTTTTTTAAGTTGCCCACCCGTTAACGAGGATATGCTGAATACTGATTCAAGGATTCTTAGCACTATTGCACGGACGAATGAATTAAGTCGACATTATTCTGAAGCCTGTATAGAGCTCTGCAAGGAGATGGGTCTGAAAGTTGTCGATCTTTGGTCAGCTATTCAAACAAGGCCAGATTGGCGAACATCCTGCTTCACAGATGGTATTCATTTCTCAGCAGAGGGTAGCATTATTGTCGTTGAGGAAATTTTGAAAGTTTTAAAGGAAGCAGAATGGGAACCTTCTTTGCACTGGAAGAATATACCAACAGAATTTGGTGAATCATCACCTTACGATGTTGTTGCATCTGACAATAAGAGCACCATCAATGTTTCGGAATTTACTTTTCACAGAGAGAAGCAATGGGATTAA___ATTATGGCCTCTTATTTATCTCATGGAAAGTTTTGCTAGGAATTCATTTTTATATGAATTATTCAGCCTACTTTCTATAGGTAATGGTTATTTTCTTGATGCCAGTGTTGTAAGAATTGGTTGATATAATTACCGATTAATCTCCTTCGGGAGATAAATTTATGTTTTATTTAGGCAACGCGTCTCTGGAGATCTCTTTCAGCTAATAAATAAACAATCTTATCTTTGCATTTGATAGATGTTCCAGATTGTTTGACTGCTGGGTTTAAGTGCCATAGCTTTTGAGGATTTTGAATGGCATTGTCAACAAGGGATCTAGTTTCAAATGCCAGTGTAGTAAGAATTGGTTGATATAATTACCGATTAATCTCCTGGAGATAGATTTATGTTTTATTTAGGCAACGTGTCTCTGGAAATCTCTTTCAGCTAATAAATAAACAATTTTATCTTTGCATTTGATAGACGTTCTATATTGTTTGACTGCTGGGTTTAAGTGCCTTCAGCTAATAAATAAACAATTTTA

Fln Alignment:

Contig34129___MIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTD-SRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSIIVVEEILKVLKEAEWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD
B8LNG4_______________MVGPRRPLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFPKDAIEQPSLIIVYFGGNDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIVRTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSVIVVEEILKVLKEAEWEPSLHWKSIPAEFGESSPYDVVASDNKSTVNVSEFTFHREKQWD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
437		75		25	0.996473
1051		86	13		1.0
1244	5		94		0.998397
1396	87		12		0.992554
1452		25		75	0.996473
1498	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
332	343	TA TA TA TA TA TA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain