SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34104

Length: 1264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene34104 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Calreticulin	-	-	1.4013e-45	-

Source	Gene names
Sma3	111R; AT1G56340; At1g08450; At1g09210; At1g56340; CAL1; CHLREDRAFT_78954; CNX; CRH; CRH1; CRH2; CRT; CRT1; CRT2; CRT3; CRTL; Crt1; EEF22; F13N6.20; F14G9.5; GSVIVT00006994001; GSVIVT00010301001; GSVIVT00022619001; GSVIVT00025039001; GSVIVT00028103001; Gm

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Ribosomal protein L38e	IPR002675	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09210.1	CRT1b, AtCRT1b calreticulin 1b chr1:2973217-2976655 REVERSE LENGTH=424	76%
RefSeq	Arabidopsis thaliana	NP_172392.1	calreticulin-2 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002330248.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP55

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 19 aas,

Fln protein: MRVKCNIMFAAFGRFIYRGKSTLIVIEPKPLTMASGGLVKLALMLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDxxxxxxxDDIPQEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKHKDAEKEAFEAEEKKKDEEEESKDSDDED

Protein Length: 407

Fln nts: TACACGATCTTTAACCCCGAGCTCCTAGGATCTCAGCGGACGCCAA_-_ATGAGAGTTAAATGCAACATAATGTTTGCTGCATTTGGACGTTTTATATACAGGGGGAAGTCGACCCTCATTGTGATCGAACCCAAACCCTTGACAATGGCGTCTGGAGGATTGGTCAAGCTGGCCCTCATGCTCATATGCTGTGCTTCGATATCCTCCGCTCATGTTTATCTCGAAGAGCGATTCAACGATGGATGGGAAAATCGTTGGGTGATATCCGATTGGAAGAAGGATGAGGGTGCATCAGGGGACTGGCTTCACACTGCTGGAAAATGGAACGGGGACCCCGAAGACAAAGGGATTCAAACTCATCCAGATGCACGTTTCTTCGCCATTTCGGCTGAGTTTCCAGAGTTTAACAACAAGGATAAGACACTTGTTCTTCAATTTTCTGTCAAGCATGAGCAGAAACTTGACTGCGGTGGTGGATATGTGAAGCTATTGAGTGGTGATGTTGACCAAAAGAAGTTTGGTGGAGATACACCTTACAGTATCATGTTTGGTCCAGACATATGTGGTTATAGTACAAAGAAGGTTCATGCAATTCTTGGTCATGGTGGAAAGAACCATCCTATTAAGAAGGATGTATCATGTGAAACGGATCAGCTTACTCATGTTTATACTTTTATTCTTCGCCCTGATGCTACCTACAGCATTCTCATTGATAATAAGGAGAAAGATTCTGGAAGTTTATACACCGAATGGGATATTTTGCCACCAAAACAAATTAAGGATCCTGATGCCAAAAAGCCAGAAGACTGGGAAGACxxxxxxxxxxxxxxxxxxxxxGATGACATTCCGCAGGAAATTCCAGATTCAGATGCCACAAAGCCAGAGGACTGGGACGATGAGGAGGATGGGGAGTGGAAAGCTCCAACCATTCCGAATCCAGAGTACAAAGGACCCTGGAAGCCAAAGAAAATCAAGAATCCAAAGTACAAGGGAAAATGGGTTGCACCAATGATTGACAATCCAGATTTTAAGGATGATCCGGAACTTTATGTTTTCCCCAGTCTGAAATACTTAGGAATCGAACTATGGCAGGTGAAATCAGGAACATTATTTGATAACATTTTAGTATGTGATGATCCTGAATATGCGAAGAAGTTGGCAGAGGAGACATGGGGAAAACACAAGGATGCTGAAAAGGAAGCTTTTGAAGCAGAAGAAAAAAAGAAAGATGAGGAGGAGGAATCTAAGGATTCTGATGATGAGGACG

Fln Alignment:

Contig34104___MASGGLVKLALMLICCASISSAHVYLEERFNDGWENRWVISDWKKDEGASGDWLHTAGKWNGDPEDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNHPIKKDVSCETDQLTHVYTFILRPDATYSILIDNKEKDSGSLYTEWDILPPKQIKDPDAKKPEDWEDKKSLRDxxxKKPEGYDDIPQEIPDSDATKPXXXXXXXXXXWKAPTIPNPEXXXXXXXXXXXXXXXXXXWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKH
B8LP55_______________MASGGLVKLGLLLICFASISSAHVYLDERFDDGWENRWVISDWKKDEGAAGEWLHTAGKWNGDPDDKGIQTHPDARFFAISAEFPEFNNKDKTLVLQFSVKHEQKLDCGGGYVKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILGHGGKNLPIKKDVSCETDQLTHVYTFILHPDATYSILIDNKEKDSGSLYTDWDILPPKQIKDPNAKKPEDWEDKEYIPDxxxKKPEGYDDIPEEIPDSDATKPEDWDDEEDGEWKAPTIPNPEYKGPWKPKKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVSDDPEYAKKVAEETWGKH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1119		97		2	0.972772
1146	4	68			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain