SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34085

Length: 2383 nt

UniGene Fasta

>sp_v3.0_unigene34085
CCTGTAGATATCCATTGCTTCCCATTCCCTCTCATGGATTTGGATTTCCCCTGATTTGATTCAGGACAAAAGCCCTTGTGGCTCCCCTACAAATATGTATTTGCATATCTGAAATTTTCCTGGCCATAATAGCTGTGAGGCTTTTTCTTTTTTTCTTTCATTCAATTTCATGGCGGGGATTCCTGAGTTGGGTTGTTGATGAATAACAGGATCAGCAGCTCAGGGGCCCGGGGCTTGTAGGGGGATGGCACCCAACTGCATAGACTGTGCCCCTAGTGATCTGTTTTGCGCGGAGGATGCTTTTGGAGTTGTGGAATGGGGCGATGCAGAGACTGGAAGTTTGTATGGAGATGAGGATCAGCAGCATTATAATTTGGACATCTGTGACCAGCATGATGAGCATTTGTGGGATGACGGTGAACTTGTAGCTTTTGCAGAAAAAGAGACCCTCTATGTTCCTAACCCAGTTGAGAAAAACAGTGCTGAAGCTAAAGCTAGGCAGGATGCTGTGGATTGGATTTTGAAGGTTCATGCACATTATGGCTTTGGTCCTGTGAGTGCAGTGCTCTCAATAAACTATCTTGATCGGTTTTTGTCTGCAAATCAATTACAGCAAGATAAGCCATGGATGACTCAACTGGCAGCTGTGGCTTGCCTCTCCCTCGCTGCCAAGATGGATGAGACAGAGGTTCCCCTTCTCCTGGACTTTCAGGTTGAGGAGGCTAAGTATATATTCGAATCTCGCACCATTCAGAGAATGGAATTACTGGTGCTCAGTACCCTTGAATGGCGAATGAGCCCTGTGACACCTCTTTCCTACATTGATCATGCCAGTCGTATGATTGGGTTGGAGAATCACCATTGTTGGATTTTCACAATGCGCTGCAAGGAGATACTGTTGAATACACTCAGAGATGCAAAGTTTTTGGGCCTTCTGCCCTCTGTTGTAGCTGCTGCAATAATGCTGCATGTGATCAAGGAAACAGAGCTTGTTAATCCATGTCAGTACGAGAATCGCCTGCTCAGTGCCATGAAAGTTAACAAGGACATGTGTGAAAGGTGCATAGGACTACTCATTGCCCCTGAATCATCATCCTTGGGCAGTTTCTCTTTGGGTTTGAAAAGAAAGAGCAGCACCATCAATATTCCTGTTCCTGGCAGCCCAGATGGAGTGCTGGACGCTACCTTTAGCTGCAGCAGCAGCAGCTGTGGTAGCGGACAGAGCACCCCAGGGTCATATGATTCCAATAACTCCAGCATTCTCTGCATCTCACCAGCGGTGATAAAGAAGAGAAAGCTTAATTATGAGTTTTGTAGCGATCTTCATTGTTTGGAGGATTAGTAGATTACCATAAATACAAGTGCTCCTCTATGAAGAACGCTTTGGAAGCAAGCTTTGCTATTAAAACTTCATTTCAACTATACCTATCCAGAATTAAGTGCAAGTTCAGGCCTATAATAGGCAACTATTATAGCTCTATGCCATTATGTCTCGCATGGGAGAAACATATTGTTATTAAATACCATTCAATATGCTTATGATTCATGAATGCTTAAGAGATTCTGCTGCTGTGTGAATATAGGCTTCAATGAGTTTTCTGTATTTTGTAACACCAGTATCAACAGACAGGATGGATACACAGCAGAAAAGCTCTATTATCATAAGTGTATATAATCAAATGTGAACTGATAGGTAAATTGGATGGTGACCTTTGAAGTTTTAGAATTAGGGGGAGCAGGGTTTGAAGTGACAGCCCCATTTGCAGTACTCCACGAAATTTCCAATGGTCGGCAAGGTAGAGAGTATATGGTTTTGTGTGAGAGATCCCGAATCGATATTGTCGGCCACGGATCCTCACATGGGATTTCACCTCGTTTTGTGAGCCATATACACGGTACCTATACGCGCCTGTTTATTGCTTCCATTGCTGCCAGCTCTATGCCCATTCCATTGATGTACGCGCTATGTCACCTACCCTTTGAAAAATATGTTTAGCTGCATATACCCAGAAATATACCCCCCACCAAATAAAGCCCAAATACCAAAAGTACCCCAGCCCTTGATTATAGTATAAATGCTCCCGGTAACTCAGAACCACCCATCTAAGAATACGAGCCTGAGGTGTGAAATGTTTAGATGGGTTCAGTTGAATGTCCACACTCATTCATTTCTGTGGATATGAACACTAGGTTTTAGTTTAGGTCCATGTCCACATTCAATGCACATGAAAGACCTGCATACTGACCCAATGCACCTGCATACAGACCCAATGCATAATGCATTCCTATATGCTTCAGAGTCCTATTATCATTTAGAGGCTAAGTCTGTATCATATTATTTTAATATTTTACTGATGCAAGTGCATCACTGCAATTCTATATA

Ace file of the UniGene sp_v3.0_unigene34085

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D3-type cyclin (Fragment) n=3 Tax=Populus RepID=A8Y914_POPTR	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclin D	IPR015451	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR95

Fln msg:

Fln protein: MAPNCIDCAPSDLFCAEDAFGVVEWGDAETGSLYGDEDQQHYNLDICDQHDEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSTINIPVPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED*

Protein Length: 367

Fln nts: CCTGTAGATATCCATTGCTTCCCATTCCCTCTCATGGATTTGGATTTCCCCTGATTTGATTCAGGACAAAAGCCCTTGTGGCTCCCCTACAAATATGTATTTGCATATCTGAAATTTTCCTGGCCATAATAGCTGTGAGGCTTTTTCTTTTTTTCTTTCATTCAATTTCATGGCGGGGATTCCTGAGTTGGGTTGTTGATGAATAACAGGATCAGCAGCTCAGGGGCCCGGGGCTTGTAGGGGG_-_ATGGCACCCAACTGCATAGACTGTGCCCCTAGTGATCTGTTTTGCGCGGAGGATGCTTTTGGAGTTGTGGAATGGGGCGATGCAGAGACTGGAAGTTTGTATGGAGATGAGGATCAGCAGCATTATAATTTGGACATCTGTGACCAGCATGATGAGCATTTGTGGGATGACGGTGAACTTGTAGCTTTTGCAGAAAAAGAGACCCTCTATGTTCCTAACCCAGTTGAGAAAAACAGTGCTGAAGCTAAAGCTAGGCAGGATGCTGTGGATTGGATTTTGAAGGTTCATGCACATTATGGCTTTGGTCCTGTGAGTGCAGTGCTCTCAATAAACTATCTTGATCGGTTTTTGTCTGCAAATCAATTACAGCAAGATAAGCCATGGATGACTCAACTGGCAGCTGTGGCTTGCCTCTCCCTCGCTGCCAAGATGGATGAGACAGAGGTTCCCCTTCTCCTGGACTTTCAGGTTGAGGAGGCTAAGTATATATTCGAATCTCGCACCATTCAGAGAATGGAATTACTGGTGCTCAGTACCCTTGAATGGCGAATGAGCCCTGTGACACCTCTTTCCTACATTGATCATGCCAGTCGTATGATTGGGTTGGAGAATCACCATTGTTGGATTTTCACAATGCGCTGCAAGGAGATACTGTTGAATACACTCAGAGATGCAAAGTTTTTGGGCCTTCTGCCCTCTGTTGTAGCTGCTGCAATAATGCTGCATGTGATCAAGGAAACAGAGCTTGTTAATCCATGTCAGTACGAGAATCGCCTGCTCAGTGCCATGAAAGTTAACAAGGACATGTGTGAAAGGTGCATAGGACTACTCATTGCCCCTGAATCATCATCCTTGGGCAGTTTCTCTTTGGGTTTGAAAAGAAAGAGCAGCACCATCAATATTCCTGTTCCTGGCAGCCCAGATGGAGTGCTGGACGCTACCTTTAGCTGCAGCAGCAGCAGCTGTGGTAGCGGACAGAGCACCCCAGGGTCATATGATTCCAATAACTCCAGCATTCTCTGCATCTCACCAGCGGTGATAAAGAAGAGAAAGCTTAATTATGAGTTTTGTAGCGATCTTCATTGTTTGGAGGATTAG___TAGATTACCATAAATACAAGTGCTCCTCTATGAAGAACGCTTTGGAAGCAAGCTTTGCTATTAAAACTTCATTTCAACTATACCTATCCAGAATTAAGTGCAAGTTCAGGCCTATAATAGGCAACTATTATAGCTCTATGCCATTATGTCTCGCATGGGAGAAACATATTGTTATTAAATACCATTCAATATGCTTATGATTCATGAATGCTTAAGAGATTCTGCTGCTGTGTGAATATAGGCTTCAATGAGTTTTCTGTATTTTGTAACACCAGTATCAACAGACAGGATGGATACACAGCAGAAAAGCTCTATTATCATAAGTGTATATAATCAAATGTGAACTGATAGGTAAATTGGATGGTGACCTTTGAAGTTTTAGAATTAGGGGGAGCAGGGTTTGAAGTGACAGCCCCATTTGCAGTACTCCACGAAATTTCCAATGGTCGGCAAGGTAGAGAGTATATGGTTTTGTGTGAGAGATCCCGAATCGATATTGTCGGCCACGGATCCTCACATGGGATTTCACCTCGTTTTGTGAGCCATATACACGGTACCTATACGCGCCTGTTTATTGCTTCCATTGCTGCCAGCTCTATGCCCATTCCATTGATGTACGCGCTATGTCACCTACCCTTTGAAAAATATGTTTAGCTGCATATACCCAGAAATATACCCCCCACCAAATAAAGCCCAAATACCAAAAGTACCCCAGCCCTTGATTATAGTATAAATGCTCCCGGTAACTCAGAACCACCCATCTAAGAATACGAGCCTGAGGTGTGAAATGTTTAGATGGGTTCAGTTGAATGTCCACACTCATTCATTTCTGTGGATATGAACACTAGGTTTTAGTTTAGGTCCATGTCCACATTCAATGCACATGAAAGACCTGCATACTGACCCAATGCACCTGCATACAGACCCAATGCATAATGCATTCCTATATGCTTCAGAGTCCTATTATCATTTAGAGGCTAAGTCTGTATCATATTATTTTAATATTTTACTGATGCAAGTGCATCACTGCAATTCTATATA

Fln Alignment:

Contig34085___MAPNCIDCAPSDLFCAEDAFGVVEWGDAETGSLYGDEDQQHYNLDICDQH-----DEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPEXXXXXXXXXXXXXXXXTINIPVPGSPDGVLDATFXXXXXXXXXXXXXXXXYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED
B8LR95_______________MAPSCIDCAPNDLFCAEDVFGVVAWDDGETGSLYGDEDQ-HYNLDICDQHFVSSIDEHLWDDGELAAFAERETLYVPNPVEKNSSEAKARQDAVDWILKVHAHYGFGPVTAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYLFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGFLPSVVAAAIMLHVIKEIELVNPYQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSSVNIPIPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLN-EFCSDLHCLED

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1450	83			16	0.994512
1858	90		10		0.90298
1936		88		11	0.923564
1965			10	90	0.90298
1966	90			10	0.90298
1967		10		90	0.90298
1970		90	10		0.90298
1975	87			12	0.992554
1976		85	14		0.993533
1977		85	14		0.993533
1980			14	85	0.993533
1982		16	83		0.994512
1984	83	16			0.994512
1985	83			16	0.994512
1986	66	16	16		0.988813
2054		88		11	0.923564
2078	11		88		0.923564
2099		88		11	0.923564
2107	90			10	0.90298
2109	90		10		0.90298
2110	90		10		0.90298
2161		80		20	0.999996
2211	66	33			1.0
2212		77		22	0.999999
2222	11		88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1194	1207	GCA GCA GCA GCA GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain