SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34084

Length: 1564 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34084

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4M6_POPTR	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Sma3	Amino acid permease	-	-	-

Source	Gene names
Sma3	24K23.18; AAP; AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; AAPB; AAPC; AT5G23810; At1g10010; At1g44100; At1g58360; At1g77380; At5g09220; At5g23810; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F19C14.3; F2P24.9; GSVIVT00007991001; GSVIVT00008237001; GSVI

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77380.1	AAP3, ATAAP3 amino acid permease 3 chr1:29075201-29077252 REVERSE LENGTH=476	60%
RefSeq	Arabidopsis thaliana	NP_177862.1	amino acid permease 3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002312967.1	amino acid permease, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: Separated hits, possible frame ERROR between 358 and 444, your sequence is shorter than subject: 435 - 492

Fln protein: MDPEAPQTSLPVEFPVTDICIEETPHKETWNNSDLKSLLDDDGRPARAGTMWTASAHIITAVIGSGVLSLAWAISQLGWIAGPGVLVAFSFITFYTSALLADCYRYPDPVKGKRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFL*IVAAIMSFGYSSIGLSLALAKVAGGHIHGSVTGVTVGTVTSAQKTWATFRALGNIAFAYSFSMLLIEIQDTIKSPPAENKTMKKATLVGISITTTYYMLCGCLGYAAFGDRSPANLLTGFGFYNPFWLVDLANVCIVVHLVGAYQVFVQPLFAFIEQWSFHKWPKSSFIHMEYSVNIPRYGLYKISVFKLVWRTCFVVTTTIISMMLPFFTDVLSLLGAVGFWPLTVYFPVEMYIVHRKIQRFTTKWMVLQTLSFVCLLVSLAAACGSIEGVVQDLKMYKPFKTTY*

Protein Length: 436

Fln nts: TATCTTTGCT_-_ATGGATCCAGAGGCCCCTCAGACTTCGCTTCCAGTAGAATTTCCTGTCACAGATATCTGTATAGAGGAAACCCCTCATAAAGAGACTTGGAATAACAGTGATTTGAAGAGTTTATTAGATGATGATGGCCGCCCGGCACGCGCAGGTACCATGTGGACTGCAAGCGCTCATATTATCACGGCAGTGATAGGCTCAGGAGTGCTTTCGCTTGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGACCTGGGGTTTTGGTTGCTTTCTCTTTCATAACGTTTTATACTTCTGCTTTGCTTGCCGACTGCTACAGATATCCTGATCCAGTAAAAGGAAAAAGAAACCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTCTTTAAATAGTAGCTGCAATTATGTCATTTGGCTATTCATCAATAGGACTTAGCCTTGCTCTTGCTAAAGTAGCAGGAGGGCATATCCATGGTAGCGTTACTGGAGTAACAGTTGGTACAGTAACTTCTGCTCAGAAAACATGGGCTACGTTTCGAGCATTAGGAAATATTGCATTTGCCTATTCATTCTCCATGCTTCTCATCGAGATCCAGGACACTATAAAATCACCTCCAGCAGAGAATAAAACCATGAAGAAGGCCACGCTGGTTGGTATCAGCATTACAACTACTTATTACATGTTATGCGGTTGCCTCGGATACGCGGCCTTTGGTGATAGATCGCCCGCAAATCTTTTGACTGGTTTTGGATTTTACAACCCTTTCTGGCTTGTCGACTTAGCTAATGTGTGCATAGTCGTTCACCTGGTTGGGGCATATCAAGTCTTTGTACAACCCCTGTTTGCTTTCATTGAGCAGTGGTCTTTTCATAAGTGGCCAAAGAGCTCATTTATTCACATGGAATACAGTGTTAATATACCTCGGTACGGTCTGTATAAGATCAGTGTTTTCAAATTGGTCTGGAGGACATGCTTTGTGGTAACCACAACCATTATTTCGATGATGCTGCCATTTTTCACTGATGTGCTATCACTTCTGGGAGCTGTAGGCTTTTGGCCTTTGACAGTGTATTTCCCTGTGGAAATGTATATAGTCCACAGGAAGATCCAGCGCTTTACAACCAAGTGGATGGTTCTACAGACTTTGAGTTTTGTCTGCTTGCTCGTGTCACTGGCAGCTGCATGTGGGTCCATTGAAGGTGTTGTGCAAGATTTGAAAATGTACAAGCCCTTCAAGACAACATATTGA___ATTATTCCAAAAGTGAGCCTGACAGGATGATGCTGAAATTGATATTGAAACAGAAGAATCTAACTGCAAGTTGTTTCTTGGAATTTAGCCAGCACTTTTTGACACGCAGAGAAAGCTTGGTTCTGCACAACCACCCCTTGGTGGAAATATCTATGAATTTATGAATCGACCAGATTCCCCTAATGTGTATGCTTACATTTTTTGGTTTAAGTAATTTGATGTGTTTTTAATGCACAAGATTCCCACAAAAA

Fln Alignment:

Contig34084___MDPEAPQTSLPVEFPVTDICIEETPHKETWNNXXXXXXXXXXGRPARAGTMWTASAHIITAVIGSGVLSLAWAISQLGWIAGPGVLVAFSFITFYTSALLADCYRYPDPVKGKRNHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFL*IVAAIMSFGYSSIGLSLALAKVAXXXXXXXXXXXXXXXXXXAQKTWATFRALGNIAFAYSFSMLLIEIQDTIKSPPAENKTMKKATLVGISITTTYYMLCGCLGYAAFGDRSPANLLTGFGFYNPFWLVDLANVCIVVHLVGAYQVFVQPLFAFIEQWSFHKWPKSSFIHMEYSVNIPRYGLYKISVFKLVWRTCFVVTTTIISMMLPFFTDVLSLLGAVGFWPLTVYFPVEMYIVHRKIQRFTTKWMVLQTLSFVCLLVSLAAACGSIEGVVQDLKMYKPFKTTY
B8LQS2_______________MDREGTQTSLELELPSRNHASDIEDHRRHNGHSLDSEKFDDDGRPRRTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWLSIVAAVMSFSYSSIGLGLSIGKVAEGNFHGTLTGVTVGTITGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSPPAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAPGNLLTGFGFYNPFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQDLKSYKPFRTTY

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
857			20	80	0.995493
859		80	20		0.995493
1033	80		20		0.999996
1060		11		88	0.923564
1102	28			71	1.0
1105			66	33	1.0
1526	25		75		0.996473
1529	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain