SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34072

Length: 1673 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34072

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Uridylate kinase plant, putative n=1 Tax=Ricinus communis RepID=B9SKI0_RICCO	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.4.1-	-	0.0	-

Source	Gene names
Sma3	RCOM_0658900;

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenylate kinase	IPR000850	-	0.0	-
Sma3	UMP-CMP kinase	IPR006266	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G26667.1	PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:9276659-9277788 FORWARD LENGTH=208	75%
RefSeq	Arabidopsis thaliana	NP_850867.1	Uridylate kinase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002302480.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A874

Fln msg: your sequence is longer than subject: 298 - 223

Fln protein: MGGWHRLRLRTLSRSNLFLVSSGVRFPYSAFSITNQGKKAAILEIFGSYFLPGEDSNSAYRSQAQFWFHSKSNFMTTEMAEAPTASVLEKKDNGVVSEEKKLHVVFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN*

Protein Length: 299

Fln nts: ATGGGGGTCCCTGATCCACCCGCCAATTTTTCTTTACCTCACAATCATCCTGCGTTATTATTATTATTTGAAGTGCAAATTCCGAAATTCCGAAATTCTTCCGAAGATTACGCATCATAGAGAAAATCCCAAATGAACTGTTACAGAAAAGGTTGCTTACTTGACGGGGTGTGGGTATGGTGTTCAATATAAATACAAGTGAAGGCCAGCTATTCCGAGC_-_ATGGGAGGCTGGCATCGTCTGAGATTACGGACGTTGTCGAGATCCAATCTCTTCCTGGTTTCATCTGGTGTCCGTTTTCCATATTCTGCCTTTTCAATTACAAATCAGGGAAAAAAGGCAGCCATACTTGAAATCTTTGGCAGCTATTTTCTGCCAGGTGAAGACAGCAATTCTGCATACAGAAGCCAGGCACAATTTTGGTTCCATTCCAAGTCAAACTTCATGACCACTGAGATGGCAGAAGCTCCTACAGCTTCAGTATTGGAAAAGAAGGATAATGGAGTTGTGTCTGAGGAGAAAAAGCTCCATGTTGTTTTTGTTTTGGGTGGGCCAGGAAGTGGAAAGGGTACTCAGTGCGAAAAGATTGTTGAAAATTTTGGGTTTACACACCTAAGTGCTGGGGATCTTCTGCGTGCTGAGCTTAAATCAGGCTCAGAAAATGGAACGATGATTGAGAATATGATAAAGGAAGGAAAGATTGTTCCCTCAGAAGTGACGGTTAAGCTCTTACAAAAGGCAATGCATGAAAGTGAGAACGATAAATTTTTGATTGATGGGTTTCCTCGAAATGAAGAGAACCGTGCAGCATTTGAAAATGTTACAGGGATCCAACCGGATTTTATTCTATTCTTTGACTGTCCTGAGGAAGAGATGTTGAGGCGGCTCCTGAATAGGAACCAAGGCCGAGTTGATGACAATATAGAGACAATAACGAAGCGCTTCAAGGTCTTTTCTGAATCAAGTCTACCAGTTGTCAATTACTACGACTCAAAGGGGAAGGTTCGCAAGATCGATGCAGTAAAGACACGGGAAGATATCTTTGAGGATATTAAACTTCTTTTCGCAACTTACATTCAAGAAAAAGAGGAAGTAAAAGTTGGGTCTCTCAATTGA___ATTCAAGTATCATAGGCCTTATTGATAACAAGGGTGGTTTTAGTCATCACATATCGAAGCTACTGCAGTATGTCGTTATGCTGTTTAGTGTTATGTAGCAAATTGTACGAGTCCTTGTAGTCAGGACTGTAGGCCATATACAAGTCTTTTTTACTACCTAATTAAGGTTAGGATTATTAGAAATCATTTAGATGACAAGGCTTGTCGGGTGTGTTACATAGGCCTTTATATTGGTTCCTGTTGCAGTTCTTATTCTACAAGGGGCTAACTTCATAGTCTGTTACGGGATTGAACGAAGATATTTTAGTACTTTTGTTTCTTCTGTATGTAAAGGAGATGAAAATAATCTACTAATTTTTTATCTATGATAACACTCCTGGTAGGAGGGCATTTCTTTTCTGCATATTAAGTCTACCGCAACATAGTTGTTCAACTTATCTTGGAAGTAAATTCTGAGTTATCATTATTGTTGGTAGGCAGGTAATCGTGTGAATCATATCGTTAATCCACTAAGTGAAGTATTAGAGGAGAAAATGAATCGGATAATTTGCACATATTC

Fln Alignment:

Contig34072___MTTEMAEAPTASVLEKKDNGVVSEEKKLHVVFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAELKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMHESENDKFLIDGFPRNEENRAAFENVTGIQPDFILFFDCPEEEMLRRLLNRNQGRVDDNIETITKRFKVFSESSLPVVNYYDSKGKVRKIDAVKTREDIFEDIKLLFATYIQEKEEVKVGSLN
D5A874_______________MATDMAEATTAAVLEKKDNGVMPEEKKLHVIFVLGGPGSGKGTQCEKIVENFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVTVKLLQKAMQESENDKFLIDGFPRNEENRAAFENVTGIQPEFILFFNCPEEEMLKRLLNRNQGRVDDNVETITKRFRVFSESSLPVVNYYDSKGKVRKIDAVKSKEDVFENIKLLFAPFIQEKEEVEVGSLN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
538			25	75	0.996473
716	80		20		0.995493
827	80		20		0.995493
876		40		60	1.0
1220		12		87	0.999964
1515			85	14	0.993533
1516	14	85			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
55	68	TTA TTA TTA TTA TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain