SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34067

Length: 1847 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34067

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	saposin B domain-containing protein [Arabidopsis thaliana] emb\|CAB63159.1\| putative protein [Arabidopsis thaliana] gb\|AAM67054.1\| unknown [Arabidopsis thaliana] gb\|AAM78109.1\| AT3g51730/T18N14_110 [Arabidopsis thaliana] gb\|AAN28760.1\| At3g51730/T18N14_110	-	-	1.0e-38	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3	Saposin B	IPR008139	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE1

Fln msg:

Fln protein: MEARMLWIALLVFLISWKNADGRKIVIFEHSEIPVRGHFSLHFPRFPSNCGNGPLLIRQEVFNLGNGILIRKEAQRVDLGGDMPESVPRLSRVNQKITEGLWKMLNIVPRLSDAPLEKAVSKSGGLKFHGSLGIFCNTCMEVSKQAEEVLSDPETLENAVKLAKSICKELPSDLSAKCDETLGTYIQEVVSALQDYMSQDKLCIGTGLCNGNNNNDLQYKLGMGRNTPSFDAGDDTTCTMCEQFIEDATNYVSQNTTQSEVLAVLHQTCSKLGVFGTECISMVDHYAPIIFLEIATISPTEFCQKISICSDSSSLALNKKQNNCDVCESAMLEIEEHLKDPETKMKVIEMLLDGCKRVAGHEQECKKLVFEYGPLILTNLEKYLDSNDVCSKIHVCELATRDAGKIDDLNGQSIIKLPSSESSAHAHSK*

Protein Length: 431

Fln nts: ATGGGATTCATATTTCTCCGTGTTTTCTTCCCTTAGGATCAGTCTGTAGCCTGTTCTTTTGCAGACGGAGTAATTGGTGATCGTTTCTGCAGTTCAA_-_ATGGAAGCGAGAATGCTGTGGATTGCTCTTCTTGTATTTCTTATATCATGGAAAAATGCAGACGGCAGGAAGATTGTCATTTTCGAACATTCTGAAATTCCTGTTAGAGGGCATTTCTCTCTCCACTTCCCAAGATTTCCATCAAATTGTGGGAATGGGCCACTGTTGATAAGGCAGGAGGTTTTCAATCTGGGAAATGGCATCTTGATTAGGAAGGAAGCTCAACGAGTAGATCTTGGTGGAGACATGCCAGAATCAGTTCCAAGGCTTTCAAGAGTGAATCAGAAAATTACTGAAGGTCTGTGGAAAATGTTAAATATTGTACCCCGCTTATCTGATGCCCCTTTGGAGAAAGCAGTTTCTAAAAGTGGGGGACTTAAATTCCATGGATCACTTGGTATTTTTTGTAACACATGTATGGAGGTTTCAAAGCAAGCTGAGGAAGTTCTATCAGACCCAGAGACACTAGAAAATGCTGTAAAGCTTGCAAAAAGTATCTGCAAGGAATTGCCATCTGATTTAAGTGCAAAGTGTGATGAAACATTAGGAACATATATACAAGAGGTTGTTTCAGCTCTGCAAGATTACATGAGTCAAGATAAGCTTTGCATTGGTACAGGATTATGTAATGGAAACAACAACAATGATTTGCAATACAAGTTAGGCATGGGCAGAAATACCCCTTCATTTGATGCAGGTGATGACACAACTTGTACAATGTGTGAGCAATTTATAGAAGATGCAACAAACTATGTCAGTCAGAACACGACTCAGTCAGAGGTTTTGGCTGTGTTGCACCAGACATGTTCAAAACTCGGTGTTTTCGGTACCGAGTGTATATCAATGGTCGACCACTATGCCCCTATCATTTTCTTAGAGATTGCAACTATCAGTCCGACTGAGTTTTGTCAGAAGATAAGTATATGCAGTGATTCGTCATCACTTGCTTTAAATAAAAAGCAGAATAACTGTGATGTGTGTGAATCTGCAATGCTGGAGATCGAGGAACACTTAAAAGACCCTGAGACCAAGATGAAAGTGATTGAGATGTTGCTAGATGGCTGCAAACGTGTCGCAGGTCATGAGCAGGAATGCAAGAAACTCGTCTTTGAATATGGGCCTCTTATCTTGACAAATTTGGAGAAATATCTAGATTCCAATGATGTTTGCTCTAAAATTCATGTGTGTGAACTTGCTACACGGGACGCTGGAAAAATTGATGACCTGAATGGGCAGTCAATTATTAAGTTGCCATCATCAGAGTCTTCAGCACATGCACATTCAAAGTGA___ACTTGCTCTTGCCCTGATGCAAGTTTAGCTTATATAGCATTGTGAATTCGAATATAGGTTCAAGGTACAGAGTAACTATTGTTCTTAAATCAAGATAATATATACTTCTATATGACACTCTTCAGGTTCGTTGTTTGTTTCCTCACCTTTTAAAATCTTGCAACATTATGTCTATCTGGCAACATTGTTTGCGAATTGATGAGAGCTGTATATTGGATTTATTGTATAAAAATAAAATACTGTGTGTATATTCTTATTTGTTCAAACTTTTATACTATTATCATGAAATTGGGGTATCGTCAGGAGAGCTTGCTTGTTAATGAAGAACATTGATGGCCTGTGAATTATGCAGATTAAAATGCATTATACTCTCTATAATCAATGGTGGAGACGAATGAATTGTTTGTATGCATGGTTATTTGTCCATGTTATGTATTATCTTTTGACAAATGAACATTGT

Fln Alignment:

Contig34067___MEARMLWIALLVFLISWKNADGRKIVIFEHSEIPVRGHFSLHFPRFPSNCGNGPLLIRQEVFNLGNGILIRKEAQRVDLGGDMPESVPRLSRVNQKITEGLWKMLNIVPRLSDAPLEKAVSKSGGLKFHGS-LGIFCNTCMEVSKQAEEVLSDPETLENAVKLAKSICKELPSDLSAKCDETLGTYIQEVVSALQDYMSQDKLCIGTGLCNGNNNNDLQYKLGMGRNTPSFDAGDDTTCTMCEQFIEDATNYVSQNTTQSEVLAVLHQTCSKLGVFGTECISMVDHYAPIIFLEIATISPTEFCQKISICSDSSSLALNKKQNNCDVCESAMLEIEEHLKDPETKMKVIEMLLDGCKRVAGHEQECKKLVFEYGPLILTNLEKYLDSNDVCSKIHVCELATRDAGKIDDLNGQSIIKLP
A9NUE1_______________MEARMLWIALLVFLITWKNADARKIVIFEHSEIPVRGRFSLHFPSVQTNCGNGPLLIRQEVFNLANGILIREEAQRVVFGGDMPESVPRLSRVNQKLAEGLSKMLNIVPRLSEVPLEKTVSRSGGLKFHGSSLGLFCNTCMEVSKQAEEVLSDPETLENAVKLAKSICNELPSDLSAKCDEMLGTYIQEVVSTLQDYLSQDKLCIGTGLCNGNNNNDLQYKLNMGRNTPSLDAGDDTTCVMCEQFIEEATYYASQNTTQSEVLAALHQTCSKLGAFGTKCKTMVDYYAPIIFLEIATISPKEFCQKISICSDSSSLALNREKNNCDVCESAMLEIETHLKDPETKMKVIEMLLDGCKRVQGHEQECKKLVFEYGPLILTNLEKYLDSNDICSQIHVCENATRDSEKNDDLNGQSFIKLP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
636	86			13	0.999973
856		8		91	1.0
996	20	79			1.0
997			20	79	1.0
1519	96			3	0.988113
1624	85			4	0.999726
1800	25			75	0.996473
1801		33	66		0.997452
1802	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain