SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34061

Length: 1839 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene34061 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI	-	-	87%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine).	-	-	91%
Sma3	S-adenosylmethionine decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.1.1.5-	-	0.0	-

Source	Gene names
Sma3	ADOMETDC2; At3g02470; At3g25570; At5g15950; At5g18930; CT093; F1N13_90; GSVIVT00017121001; GSVIVT00019871001; GSVIVT00021193001; GSVIVT00038126001; GSVIVT00038127001; MICPUCDRAFT_56850; MICPUN_58289; OJ1004_A05.7; OJ1264_A04.4; OJ1476_F05.33; OJ1489_G03.1

Source	GOs	Term	Type	Identity
Sma3	adenosylmethionine decarboxylase activity	GO:0004014	Molecular Function	-
Sma3	spermine biosynthetic process	GO:0006597	Biological Process	-
Sma3	spermidine biosynthetic process	GO:0008295	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02470.1	SAMDC S-adenosylmethionine decarboxylase chr3:510223-511323 FORWARD LENGTH=366	60%
RefSeq	Arabidopsis thaliana	NP_001154585.1	S-adenosylmethionine decarboxylase 1 beta chain [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002329311.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G8C847

Fln msg: Overlapping hits, possible frame ERROR between 1453 and 1380,

Fln protein: MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDIxxxxxxxxxxxxxxxxxxxxxxxxxxYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENGCLQLTEKEKKLLKCEMQEG*

Protein Length: 376

Fln nts: GAGTTCGCTAACTTTAGACTAGCGGTTAATTCAAACAGGAAAATAATTGTGAGCCACAAGAATTGGAGTAGAGGTCCGCGGTCACGTCTCTGCCCTTTATATAGAGTCACCCCTTCGCAATTTACATAACCAAATTGTTCGAGTCTTCGATTGCAGCATACTTGCGATACGGGATTTCTTCGTTTGTGATTTTCGTGAGGGGTTTTGCTGCCTCGTCTTGGTTTCCTGAGGGATAGCTGAGGGATTTACTGGATCGGAGTCGTTTCCAGGCTCAAATCATCAGTTTTATTATACAAAAGGCTGAATGTTCTGATGGAGACCAAAGGCGGTAAAAAGCAGTCCAGTAGTAATTGCCCTCAGTACGAAACCCCTTTAGGCTACAAGATTGAAGACGTTCGACCAAACGGTGGCATCGAGAAATTCCGCAGCGCTGCATACTCCAACTGCGTGCGAAAGCCATCCTGATATCTCGTGGGTGGATTCGTAGAGTAGGAATTGTAGGGTTAGGTGTTTTTCAATAAGTTCAGTCATCCTGCTAGGAGCTGATCTGCAGCTTCGCTGCACGGCTGTTAGATTGGCTCCCCACTCCTCTGGAGTGGCTATTTTTCCCCCAACGCTTTAGGAATTTCTTTCATAGTCTGTTTTTTTCTTCTGTATCTGATCTGCATAGGCTGTAACATTTTGTTTGCATTTGAAA_-_ATGGGTGTGGCCTGTGGAGATTCTGTTGCTCCCATGACTGCAATTGGGTTTGAAGGATTTGAAAAGCGACTAGAGGTCGAGTTCTTTGCACCTTCAATTTTCAATGATCCAGAAGGAAGAGGTTTGAGGGCACTCACTCGAGCTGATTTGGATGAAATGCTGGATGCAGCACAATGCACAATTGTTTCTGAGCTCTCTAATGAGCATCTCGATTCGTATGTCCTGTCTGAATCGAGTCTGTTTGTTTATCCGTATAAGCTTGTTCTGAAGACTTGTGGGACTACCAAGCTTCTTCTTTCCATTCCTCTGATTCTGAAGAACGCAAGCAAGTTGTCTCTCTCTGTCAAAAATGTTAAATACACTCGAGGGACATTTATCTTTGCTGGAGTCCAGCCATTTCCTCATCGTAGCTTCGGCGAGGAAATATCTTACTTGGATAAATACTTTGGAAAGCTTGGTTCTGGAGGCAAGGCATATGTGATGGGGGATTCTGGGAAAGCGTATAATTGGCATGTCTACTCTGCTAGTGCTGTGGATACTTCATTTGAGGGAAATGCTCCTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGTCTGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGA___GAGATGCACATTGTTCTGG

Fln Alignment:

Contig34061___MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDILPSMWVFHECS*RxxxxxxxxxxxxGAAISTIHVTP---FSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG
G8C847_______________MGVACGDSVVPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKGYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSNSAMEITLNSGISDILPESKI---CDFQxxxxxxxxxxxxGAAISTIHVTPEDGSSYASFEAMGYNPKDCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1217	50		50		1.0
1573	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain