SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34058

Length: 2189 nt

UniGene Fasta

>sp_v3.0_unigene34058
ATGGGACTGACACACCTAAATGTCTTCTTCCATGACTTTCGCAAGCAAATCCTCAGCTCTCAGTTGCGTGTTAAATTACCATATTAGATCCCAGTTGCGTGTTGCTTCACGATACTTGATTATGCTATAGACGCATAAAACCTCAGCAGCTTTAATAGTAGACAAATAACTTAATTCTGAGCGTGCAGGGGGAAGAGGAGGAATAATGGCGAGCGGAAGTCTCGTTTCGTTCTTGAACATCCCCAAGGATTCGCATTTTTCAATGCAAAATCTGCCCTATGGAGTGTTCAGGCCTACGCCTGAACAGCAGCCGAGGCCCGCCGTGGCCATTGGCGAGTATGTTTTGGACCTCAGCGTCTTGGCCCGCGCTGGGCTTTTCCATGGCCCTGTGCTCAAGGGTTCCGATTGTTTTCTCCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACTTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGACCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGGTCATAAGTTACATACCAGATTGTCAGTTGCCCAATATGGTGATGGCTACCGGGCAGTAGTATCATGCCTTACTGATTCTCAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGGCTCTCATAATATACACATTTTAACAAAAAATGCTAAATCCAATGCATTTTTGTTTGAACTGGGAAAGGATCTATAATTCA

Ace file of the UniGene sp_v3.0_unigene34058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fumarylacetoacetase [Medicago truncatula]	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Fumarylacetoacetase	-	-	2.662e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Fumarylacetoacetase.	EC:3.7.1.2	-	4.17e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Tyrosine metabolism	00350	4.17e-09	%
Sma3	Styrene degradation	00643	4.17e-09	%
Sma3	Metabolic pathways	01100	4.17e-09	%

Source	Gene names
Sma3	At1g12050; CHLREDRAFT_122609; F12F1.8; GSVIVT00010893001; MICPUCDRAFT_30014; MtrDRAFT_AC150798g15v2; OJ1524_D08.17; Os02g0196800; OsI_06236; OsJ_05754; PHATRDRAFT_50281; PHYPADRAFT_137922; PHYPADRAFT_190260; POPTRDRAFT_298762; POPTRDRAFT_652386; RCOM_0670

Source	GOs	Term	Type	e value	Identity
Sma3	fumarylacetoacetase activity	GO:0004334	Molecular Function	0.0	-
Sma3	aromatic amino acid family metabolic process	GO:0009072	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12050.1	fumarylacetoacetase, putative chr1:4072904-4075856 FORWARD LENGTH=421	67%
RefSeq	Arabidopsis thaliana	NP_172669.2	fumarylacetoacetase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002307870.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg:

Fln protein: MASGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS*

Protein Length: 426

Fln nts: ATGGGACTGACACACCTAAATGTCTTCTTCCATGACTTTCGCAAGCAAATCCTCAGCTCTCAGTTGCGTGTTAAATTACCATATTAGATCCCAGTTGCGTGTTGCTTCACGATACTTGATTATGCTATAGACGCATAAAACCTCAGCAGCTTTAATAGTAGACAAATAACTTAATTCTGAGCGTGCAGGGGGAAGAGGAGGAATA_-_ATGGCGAGCGGAAGTCTCGTTTCGTTCTTGAACATCCCCAAGGATTCGCATTTTTCAATGCAAAATCTGCCCTATGGAGTGTTCAGGCCTACGCCTGAACAGCAGCCGAGGCCCGCCGTGGCCATTGGCGAGTATGTTTTGGACCTCAGCGTCTTGGCCCGCGCTGGGCTTTTCCATGGCCCTGTGCTCAAGGGTTCCGATTGTTTTCTCCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACTTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGA___CCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGGTCATAAGTTACATACCAGATTGTCAGTTGCCCAATATGGTGATGGCTACCGGGCAGTAGTATCATGCCTTACTGATTCTCAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGGCTCTCATAATATACACATTTTAACAAAAAATGCTAAATCCAATGCATTTTTGTTTGAACTGGGAAAGGATCTATAATTCA

Fln Alignment:

Contig34058___MASGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS
D5ABT0_______________MASGSLVSFLNIPEDSHFSMQNLPYGVFRPTPEQQPRPGVAIGEYVLDLSALARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPALRDNAELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPESPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPVGKPTPGFGPSAKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTTVSPWIVTLEALQPFTCEAPVQDPPPLPYLTGKSCRTYDIPLEVALKPAGEDKSSVVCKSNFKHLYWTIEQQLAHHTINGCNLRPGDLLGSGTISGPEPESFGSLLELSWDGKNPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
343			81	18	0.999994
355		18		81	0.999994
358		18		81	0.999994
359		81		18	0.999994
362			20	80	0.999996
364		20		80	0.999996
367	80	20			0.999996
373		80	20		0.999996
380	76	15	7		0.999983
385	84	15			0.999986
389		83	16		0.999991
396	16		83		0.999991
397			16	83	0.999991
398	83		16		0.999991
400	83			16	0.999991
406		83		16	0.999991
409		83		16	0.999991
412		83		16	0.999991
415		16		83	0.999991
805		8		92	0.999718
806	8		92		0.999718
808			92	8	0.999718
880	4		95		0.994598
881		4	95		0.994598
884			95	4	0.994598
1079	64	21			1.0
1469	3		96		0.984346
1672	33		66		1.0
1762		12	87		0.992554
1763	16		83		0.994512
1765		83		16	0.994512
1833	85			14	0.993533
1888	20		80		0.995493
1890	80	20			0.995493
1892		20		80	0.995493
1893			20	80	0.995493
1895	20			80	0.995493
1929	50			50	1.0
2023	84		15		0.999986
2109	18		81		0.999994
2136	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain