SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33930

Length: 429 nt

UniGene Fasta

>sp_v3.0_unigene33930
ACCACCCTTGGCTTCCACTCCTCCACACCACACACCACTTCTAGCGCCATCCCCATCTCCTTCTCGAGTCGTAGTATTATCCTTTTTGCTTCCCTTCACCATCACCTAGTTCAGCTGCGAGAATGGCTTCAGCTGTGAGCAGCCGCCGCGAGCTTGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGAAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTCCAGTGAGGAGGAGATTGGAGGTGTGATGAAAGAGGTGGACTCGAACAAAGACGGCTTCATCAGCTTCGACGAGTTCGTGGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCGTCGCTTCAGCTAATTGATGCCCACGCCGCCCCACTAATTAATAAATAAATATATGCACATATATTT

Ace file of the UniGene sp_v3.0_unigene33930

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	1.0e-32	94%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	94%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	7.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	9.0e-14	49%
RefSeq	Populus trichocarpa	XP_002312460.1	predicted protein, partial [Populus trichocarpa]	6.0e-15	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: your sequence is shorter than subject: 86 - 166

Fln protein: MASAVSSRRELEDVFRKFDTNGDGKISKSELSAILKCSSSEEEIGGVMKEVDSNKDGFISFDEFVAANSNGLNAARLMLGVASAN*

Protein Length: 87

Fln nts: ACCACCCTTGGCTTCCACTCCTCCACACCACACACCACTTCTAGCGCCATCCCCATCTCCTTCTCGAGTCGTAGTATTATCCTTTTTGCTTCCCTTCACCATCACCTAGTTCAGCTGCGAGA_-_ATGGCTTCAGCTGTGAGCAGCCGCCGCGAGCTTGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGAAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTCCAGTGAGGAGGAGATTGGAGGTGTGATGAAAGAGGTGGACTCGAACAAAGACGGCTTCATCAGCTTCGACGAGTTCGTGGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCGTCGCTTCAGCTAATTGA___TGCCCACGCCGCCCCACTAATTAATAAATAAATATATGCACATATATTT

Fln Alignment:

Contig33930___ELEDVFRKFDTNGDGKISKSELSAILKCSSSEEEIGGVMKEVDSNKDGFISFDEFVAANSNGLNAARLMLGVASAN
O22429_______________ELEDVFRKFDTNGDGKISKSELSAILKCRSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASAN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
194	66	33			1.0
230		42	57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain