SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33901

Length: 999 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33901 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg:

Fln protein: KISSQHINKFSGLFSMAKGACGYGNSATSLTARGGLVMASASAKIYREGVGCGACYQAWD*KNCCF*GFSWMKTEL*F*FFFDINILILIQIRCTDPGVCTKSGVKVLVTGFTKSTQTDFVLSAPGFSKLAVASKAAQFLKMGTVDVDYKRIPCDYGSQNMSVKVDKSSKYPDYLAVQFLYQGGQTDITAVDIDRVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAMWRPGSVYESGVQITEIAQEGCSPCETGNWTDTRIR*

Protein Length: 284

Fln nts: TTAAAATTAGTAGTCAGCACATTAATAAATTCTCTGGATTGTTTTCCATGGCAAAAGGCGCATGTGGATATGGGAACTCTGCAACAAGCTTAACTGCTCGTGGAGGGCTGGTCATGGCAAGCGCAAGTGCCAAAATATACAGAGAAGGCGTAGGATGCGGCGCCTGCTATCAGGCATGGGACTAAAAAAACTGCTGTTTTTGAGGATTTTCATGGATGAAAACTGAATTGTAATTCTGATTTTTCTTTGATATTAATATCTTGATTTTGATTCAGATAAGATGCACAGATCCAGGCGTTTGCACCAAATCTGGAGTGAAAGTTTTGGTTACAGGCTTCACAAAAAGCACTCAGACAGATTTTGTTCTTTCCGCTCCCGGTTTCTCGAAACTGGCGGTAGCTAGCAAAGCTGCTCAATTTCTCAAGATGGGAACCGTGGATGTTGACTATAAACGAATCCCCTGTGACTATGGAAGCCAAAACATGAGTGTGAAAGTAGACAAAAGTAGTAAATATCCCGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGCGGTCGACATTGATCGGGTGGGATCATCAGGTTGGCAGTATATGACCCGCAAAAACGGTGCAATTTGGGGAATTCAGAATCCTCCCATAGGTTCCCTATCATTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACCAGAAATTTACTGCCCGCAATGTGGAGGCCAGGCTCTGTTTATGAATCTGGAGTTCAGATCACAGAAATAGCACAAGAAGGCTGTAGTCCCTGCGAAACTGGCAACTGGACTGACACACGCATACGCTAA___TTAATTGTGATAATCCACAGAGGAGTAGAGCAATTGTTTGAGGCATAGGACTGAGAGTTGTTTCTAATTGGCTAGCATAGTCAAAAAAGCAGTGAGATGTTTATATATATTGTATTTTCCCAGATAAATATATACAGAAATATTATTT

Fln Alignment:

Contig33901___GACGYGNSATSLTARGGLVMASASAKIYREGVGCGACYQAWD*KNCCF*GFSWMKTEXXXXXXXXXXXXXXIQIRCTDPGVCTKSGVKVLVTGFTKSTQTDFVLSAPGFSKLAVASKAAQFLKMGTVDVDYKRIPCDYGSQNMSVKVDKSSKYPDYLAVQFLYQGGQTDITAVDIDRVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAMWRPGSVYESGVQITEIAQEGCSPCETGNWTDTRI
A9NMA2_______________GACGYGTSATSLTTRGGLVTASASAKIYREGVGCGACYQ----------------------------------IRCTDPGVCSKSGVKVLVTDFTKNTQTDFVLSARSFSRLAVPSKAAQFLKMGTVDVDYKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITAVEVDQVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
122	16			83	0.994512
127		83		16	0.994512
128	16			83	0.994512
414		57		42	1.0
416	57	42			1.0
417	42			57	1.0
418	42	57			1.0
420	57	42			1.0
422		42	57		1.0
423		42		57	1.0
424	42	57			1.0
427	42	57			1.0
499			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain