SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33839

Length: 1236 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33839

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Annexin n=1 Tax=Annona cherimola RepID=C0L7E4_ANNCH	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Annexin	-	-	4.136e-09	-

Source	Gene names
Sma3	B1040D06.12; B1339H09.19; GSVIVT00030646001; Nann; Os08g0425700; Os09g0394900; OsI_29297; OsI_31267; OsJ_29255; P0456B03.120; PHYPADRAFT_121779; PHYPADRAFT_173863; PHYPADRAFT_221787; POPTRDRAFT_569376; POPTRDRAFT_580629; RCOM_0232370;

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-
Sma3	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Annexin	IPR001464	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Annexin, plant	IPR009118	-	-
Sma3		IPR015472	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-
Sma3	Annexin repeat	IPR018502	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW6

Fln msg:

Fln protein: MAYCAVPCGVNPLQRECEEIHLASKGLGCDEVKIIQILGSKNAQQRKEIRQTYYAMYKEDLCKRLEKELHGKLEKDVVLWMHDAAERDAIIARTSLEGWRTDDRALIEVICTRSSTQIVKIREAYQKRYQRCLDDDVFCKTKGPYQKLLLALLKAHRCECKGVDMNKVKCDAMLLYEAGEGRCGTDEETFIRIFSERTVAQLRATFACYKQEYGHDITTALRRETQKEFEEAIRVTIKSMYLPAHYFAKELHRAMKGLVNDESAIARVMVTRAEVDLKEINVVYERKYKMSIVQAFHQEISGYFKNFCLALTVRAGIPQVSMSHCGCN*

Protein Length: 330

Fln nts: ATCGCAGTTCGGATTATCTCGAAAACTACAAGTTAGTAGCAGAGTTTGAGGGAGCTCCCACTTCGAGAGCATAAAA_-_ATGGCTTATTGTGCAGTCCCATGCGGTGTCAACCCCCTGCAAAGGGAGTGTGAGGAAATCCATCTCGCTTCCAAAGGTCTGGGATGTGACGAGGTGAAGATAATACAAATACTGGGAAGCAAAAATGCGCAGCAGCGGAAGGAGATAAGACAAACCTATTATGCAATGTACAAGGAAGACCTTTGCAAGAGGCTGGAGAAGGAGCTTCACGGCAAATTAGAGAAAGACGTTGTGTTATGGATGCACGACGCAGCTGAACGGGACGCTATCATTGCCAGAACCTCCCTGGAAGGATGGCGCACAGATGATCGTGCTCTAATCGAAGTGATTTGCACAAGGTCGTCCACTCAAATCGTTAAGATTCGCGAAGCTTATCAGAAACGATATCAGAGGTGCCTTGATGATGACGTTTTCTGCAAAACGAAGGGTCCCTATCAAAAGCTACTTCTGGCGCTGCTGAAAGCACACCGATGTGAATGTAAAGGAGTGGACATGAACAAGGTTAAATGCGATGCCATGCTGTTGTACGAAGCAGGGGAAGGGCGTTGTGGAACTGATGAGGAAACTTTTATCCGAATATTCAGTGAGAGAACTGTCGCCCAACTACGAGCTACATTTGCTTGCTACAAGCAAGAATACGGGCACGACATTACAACGGCGCTCAGGAGGGAAACACAGAAAGAATTTGAGGAGGCCATTCGAGTTACAATCAAGAGCATGTATTTGCCAGCTCACTATTTCGCTAAGGAGCTTCACAGAGCAATGAAAGGACTTGTAAATGACGAATCTGCAATAGCTCGTGTAATGGTGACTCGGGCAGAGGTGGACTTGAAGGAAATCAATGTGGTGTATGAGAGAAAGTATAAAATGAGTATCGTACAGGCATTCCACCAGGAAATTTCTGGTTATTTTAAGAACTTCTGCCTTGCTCTTACAGTTCGCGCTGGCATTCCCCAAGTGTCCATGTCACACTGCGGCTGCAACTAA___CCAATTTGGATCAGTTACTTAGCATATAATGATAATAATAATAAAGGACAGCTATTAGCGTCCACTAGCCTGGGACGCAGGCAGTCTTGTCATGTGTGATGCGTGTATGCATATTTACTGTAACTGCTTCTATGAATATAATATAATGCTTGGCTTTCTCTCAGTGATATACC

Fln Alignment:

Contig33839___YCAVPCGVNPLQRECEEIHLASKGLGCDEVKIIQILGSKNAQQRKEIRQTYYAMYKEDLCKRLEKELHGKLEKDVVLWMHDAAERDAIIARTSLEGWRTDDRALIEVICTRSSTQIVKIREAYQKRYQRCLDDDVFCKTKGPYQKLLLALLKAHRCECKGVDMNKVKCDAMLLYEAGEGRCGTDEETFIRIFSERTVAQLRATFACYKQEYGHDITTALRRETQKEFEEAIRVTIKSMYLPAHYFAKELHRAMKGLVNDESAIARVMVTRAEVDLKEINVVYERKYKMSIVQAFHQEISGYFKNFCLAL
A9NMW6_______________FASTSCSSTQDIKDCEAVYNCCKGIAASKGRLEHILASRNATERKELGDLFYALYKEDLSTLLHAELWGNLEKAVVLWMHDPAERDAIIAKTELRSQYPDFRALTEILCSRTPAETLRIREAYRGLYKACLEEDIAQETVGPHQKLLFTLAKAQRCPSRDVNICQAKCDAKRLYGAREGRIGIDEGAIVKLLSDRNLNHLRAAFGYYKQFYGHDILKALRRETSGKFEYALRIIIKCICYLAKYFSKVLRISLD--QSEYAALTRVMVTRAEVDMEEIKATYREKYGISLEQAICKQTSGSYRDFLLQL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
469	28		57		1.0
657			10	90	0.90298
658		90		10	0.90298
659	90			10	0.90298
973	80		20		0.995493
1012	25	75			0.996473
1033	40		59		1.0
1064		93	6		0.999999
1090			6	93	0.999999
1091	92		7		0.999999
1109	25		74		1.0
1224		11		88	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1095	1107	ATA ATA ATA ATA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain