SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33807

Length: 2898 nt

UniGene Fasta

>sp_v3.0_unigene33807
AATGCTAGAAGCTAGTATAATTCAACCAAGTAAAAGTCATTTCTCTGCTCCAGTAGTATTGGTGCACAAGAAGGATGGATCATGGCGCATGTGTCCGGATTACAGGGAGCTCAACAAGCTCACTATTAAAGATAAGTTCCCCATTCCTGTCATTGATGAATTACTGGATGAATTGCATGGATCAATTTACTTCACCAAGTTGGATCTCCGTTCAGGATATCATCAAATCAGAATGAAGATTGAAGACATTCCAAAAACGGCATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGCCTTACCAATGCACCTTCAACATTTCAAGGTTTGATGAATTCAATTTTCAAACCATTCCTTAGAAAATTTGTGTTAGTATTTTTTGATGATATACTAATCTACAGCAAGTCTTGGAAGGATCATGTTGAACATGTTGACAGGGTGCTACAACTATTGGAGGAGAAACAATTATATGCAAAAAGATCCAAATGTTTCTTTGGAGTACAGGAGGTGGAATATTTGGGTCATATTGTATCTCATGAAGGAGTTAAGGTAGACCCTAGCAAAATTAAAGCCATTAAGGAATGGAAAATCCCCACATCCATAAAGCATCTGCGAGGATTTCTTGGGTTGACAGGGTATTATCGCAAATTTGTTAAGAATTATGGGAGAATAGCAGCACCTCTAACAACATTACTGAAGAAAGATGCATTTTCATGGACTCCGGAAGCAACAAAGGCCTTTGAACATCTTAAAAAGGCAATGTGCCAAGCACCAGTCTTAGCTACACCAGACTTCACAAAAACCTTTATTGTGGAATGTGATGCTTCAGGAAATGGAATTGGTGCTGTTCTAATGCAAGATGAAAGGCTCATTGCTTTTGAAAGTCGTCCAATCAAGGGAAGGTTTTTAAGCAAAGCTATCTATGAGAAGGAAATGTTGGCAATACTACATGCACTTAAAAAATGGCGACCTTACCGAATGGGAAGACTCTTCAAGGATGAGGATATCAAAGCATTGTTTTGTGATATTTCTATTATCCCACCAGATTGGATAAAAGAAGCAAAGGATAAATGGAAGAAGGATGAAGACGTATGGCCACTTATTCAAAAGTTGCAAAAGATCCCAATATTGCCAGAAATTGAAGAGGAAGGAAAAATCATATTGGAACCTGGAGTAGTCACAGAAATAAGAACCCGACAGCTACAAAATCAATCAATTTCAGAGTATCTCATCAAGTGGAAGAACTTAGCTACTGAAGATTCCACATGGGAGGACAAGAATTTTATACAGAAGCATCAAGAACTACTCAAGCGTTGAGGACAACGCTTTCTGAAGGAGAGGGGCATGTTAGGCCCCTATATTATTAGTATAACCCCTTATTTTATTAGTAGAACCCACTTATTATATTGATGTACCCATGTAATGCCCATATTGTTACTATGGCACCCCATAGAAGCCCACTATTGTTATTATTGTGCCCTTACATTATTATTGTTATGTAGGCTCTCATTATGTTATAACCCCTTAGACTCCTATATATAGAAAGGAGGTCTTTTCATTTGTATCATCCAAGAATTGTTCATTTATGTAATGTAAAGGAGGTTGCCCCCTCGAAGAGGCTGAATTCTAAGGCGTTGATCTATATTTTCTATCTTTTCTTGAGCTGGTTTCATAACATTTGGTATCAGAGCTTTGGATTCTAGGGTTTCGCTGCTCCAAACAAGTCATCGTGGCATTTTCGCTATAACTTTTTTTCTGTGATGTTTCAGAAGTCGAAAAAAAAACCCATTTGAGAAGACATCGCGCTGAACCTTGGGTCCGAATTTCAGAGCTTTTCGCGCTATATTTTCGGAGTTATGATCTGAGGAAGTTGGTCTTTTTGCAGACTCCTGAATTACATTCCAAACAGGTGACCTGGGGAAAATCGTCATAACTTTCTCTCTGGGGATCAGATTGAAATTTCGTAAGAAGGTACAGAAAGGGGACGGACTGTAGTTTCTTGTGTGCGAGTTTCAGATCCAAAGGTTGAAACAGTGACTCGTGGCACGTCGTACAAGTTTGCTCTACTGAATTAGTCTAAAAGGAAGTCACTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAATTTGGGTCAGACTTGTGGCATTGGAAAGAGGACACAGAAGGCTACTACAGGTCGCAATTTCAGAACTGGATGATCTGAAATTACAGAGATACATCAGATTCAATATCAGGCTTCTACAAAGTGAAAAAAGGTGTGTAGTTTTTTTTTTAAATTTTTGCATAAGCTTGGTTTAACGGAATTCAAAGGGCATAGTAAAGCATTATTATCGGTAACTGATGCCCCGAAAGAAAATGAAAACACCTAGTAAGGAACCTGAAAGCTCTAGCATGACTCATGAAGAAGAGGAAGAAATGATACATGATATATCAAAATTACAAGAACAAGTGCAACACATGTCACTCTCACAAAAGCTAACAGAAGCTAAGATAAATGGCGTGGAATCTAAGATAAATGGCGTGGAATCTAAGATAAAGGGCATGGAAGCTAAGATGGATGATTTGAAGACAGACATGAAGACCGATTTGAAGACAGACATGGCAGATTTGAAGACAGATTTGACAAATTTTCTACAAGAAATACTTACTAATGGTGAAAAGGTTGTAAAGGAAACTCATGATGTGAACAAAAGAGTTGTTAATCATGATTCCATAGATGCTAATGTTGGATCGAAGACTCACCATATTCCAAAAATCGATATGAGGAAGTTTGATGGCAAGGATCCTGCCACATGGATATTACAGATGGAGCAATTCTTCGATCTCAATAATGTGCAAAACACACAAAAGGTACGTATGGCAACTTTATATTTGGAACCA

Ace file of the UniGene sp_v3.0_unigene33807

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Polyprotein	-	-	2.063e-24	-

Source	Gene names
Sma3	101O9.2; F23H6.1; H0124B04.16; H0201G08.12; H0321H01.8; H0502G05.10; H0616A11.2; H0624F09.1; H0807C06-H0308C08.3; H0818H01.18; H0823A09.5; LOC_Os03g05340; LOC_Os03g05350; LOC_Os03g10000; LOC_Os03g13350; LOC_Os03g23200; LOC_Os03g23220; LOC_Os03g23830; LOC_

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	1.0e-37	52%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	1.0e-37	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: your sequence is longer than subject: 443 - 66

Fln protein: MLEASIIQPSKSHFSAPVVLVHKKDGSWRMCPDYRELNKLTIKDKFPIPVIDELLDELHGSIYFTKLDLRSGYHQIRMKIEDIPKTAFRTHEGHYEFLVMPFGLTNAPSTFQGLMNSIFKPFLRKFVLVFFDDILIYSKSWKDHVEHVDRVLQLLEEKQLYAKRSKCFFGVQEVEYLGHIVSHEGVKVDPSKIKAIKEWKIPTSIKHLRGFLGLTGYYRKFVKNYGRIAAPLTTLLKKDAFSWTPEATKAFEHLKKAMCQAPVLATPDFTKTFIVECDASGNGIGAVLMQDERLIAFESRPIKGRFLSKAIYEKEMLAILHALKKWRPYRMGRLFKDEDIKALFCDISIIPPDWIKEAKDKWKKDEDVWPLIQKLQKIPILPEIEEEGKIILEPGVVTEIRTRQLQNQSISEYLIKWKNLATEDSTWEDKNFIQKHQELLKR*

Protein Length: 444

Fln nts: A_-_ATGCTAGAAGCTAGTATAATTCAACCAAGTAAAAGTCATTTCTCTGCTCCAGTAGTATTGGTGCACAAGAAGGATGGATCATGGCGCATGTGTCCGGATTACAGGGAGCTCAACAAGCTCACTATTAAAGATAAGTTCCCCATTCCTGTCATTGATGAATTACTGGATGAATTGCATGGATCAATTTACTTCACCAAGTTGGATCTCCGTTCAGGATATCATCAAATCAGAATGAAGATTGAAGACATTCCAAAAACGGCATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGCCTTACCAATGCACCTTCAACATTTCAAGGTTTGATGAATTCAATTTTCAAACCATTCCTTAGAAAATTTGTGTTAGTATTTTTTGATGATATACTAATCTACAGCAAGTCTTGGAAGGATCATGTTGAACATGTTGACAGGGTGCTACAACTATTGGAGGAGAAACAATTATATGCAAAAAGATCCAAATGTTTCTTTGGAGTACAGGAGGTGGAATATTTGGGTCATATTGTATCTCATGAAGGAGTTAAGGTAGACCCTAGCAAAATTAAAGCCATTAAGGAATGGAAAATCCCCACATCCATAAAGCATCTGCGAGGATTTCTTGGGTTGACAGGGTATTATCGCAAATTTGTTAAGAATTATGGGAGAATAGCAGCACCTCTAACAACATTACTGAAGAAAGATGCATTTTCATGGACTCCGGAAGCAACAAAGGCCTTTGAACATCTTAAAAAGGCAATGTGCCAAGCACCAGTCTTAGCTACACCAGACTTCACAAAAACCTTTATTGTGGAATGTGATGCTTCAGGAAATGGAATTGGTGCTGTTCTAATGCAAGATGAAAGGCTCATTGCTTTTGAAAGTCGTCCAATCAAGGGAAGGTTTTTAAGCAAAGCTATCTATGAGAAGGAAATGTTGGCAATACTACATGCACTTAAAAAATGGCGACCTTACCGAATGGGAAGACTCTTCAAGGATGAGGATATCAAAGCATTGTTTTGTGATATTTCTATTATCCCACCAGATTGGATAAAAGAAGCAAAGGATAAATGGAAGAAGGATGAAGACGTATGGCCACTTATTCAAAAGTTGCAAAAGATCCCAATATTGCCAGAAATTGAAGAGGAAGGAAAAATCATATTGGAACCTGGAGTAGTCACAGAAATAAGAACCCGACAGCTACAAAATCAATCAATTTCAGAGTATCTCATCAAGTGGAAGAACTTAGCTACTGAAGATTCCACATGGGAGGACAAGAATTTTATACAGAAGCATCAAGAACTACTCAAGCGTTGA___GGACAACGCTTTCTGAAGGAGAGGGGCATGTTAGGCCCCTATATTATTAGTATAACCCCTTATTTTATTAGTAGAACCCACTTATTATATTGATGTACCCATGTAATGCCCATATTGTTACTATGGCACCCCATAGAAGCCCACTATTGTTATTATTGTGCCCTTACATTATTATTGTTATGTAGGCTCTCATTATGTTATAACCCCTTAGACTCCTATATATAGAAAGGAGGTCTTTTCATTTGTATCATCCAAGAATTGTTCATTTATGTAATGTAAAGGAGGTTGCCCCCTCGAAGAGGCTGAATTCTAAGGCGTTGATCTATATTTTCTATCTTTTCTTGAGCTGGTTTCATAACATTTGGTATCAGAGCTTTGGATTCTAGGGTTTCGCTGCTCCAAACAAGTCATCGTGGCATTTTCGCTATAACTTTTTTTCTGTGATGTTTCAGAAGTCGAAAAAAAAACCCATTTGAGAAGACATCGCGCTGAACCTTGGGTCCGAATTTCAGAGCTTTTCGCGCTATATTTTCGGAGTTATGATCTGAGGAAGTTGGTCTTTTTGCAGACTCCTGAATTACATTCCAAACAGGTGACCTGGGGAAAATCGTCATAACTTTCTCTCTGGGGATCAGATTGAAATTTCGTAAGAAGGTACAGAAAGGGGACGGACTGTAGTTTCTTGTGTGCGAGTTTCAGATCCAAAGGTTGAAACAGTGACTCGTGGCACGTCGTACAAGTTTGCTCTACTGAATTAGTCTAAAAGGAAGTCACTGTGGGAGATTTCACATAACTCTTCCTTGGAGAATCCAATTTGGGTCAGACTTGTGGCATTGGAAAGAGGACACAGAAGGCTACTACAGGTCGCAATTTCAGAACTGGATGATCTGAAATTACAGAGATACATCAGATTCAATATCAGGCTTCTACAAAGTGAAAAAAGGTGTGTAGTTTTTTTTTTAAATTTTTGCATAAGCTTGGTTTAACGGAATTCAAAGGGCATAGTAAAGCATTATTATCGGTAACTGATGCCCCGAAAGAAAATGAAAACACCTAGTAAGGAACCTGAAAGCTCTAGCATGACTCATGAAGAAGAGGAAGAAATGATACATGATATATCAAAATTACAAGAACAAGTGCAACACATGTCACTCTCACAAAAGCTAACAGAAGCTAAGATAAATGGCGTGGAATCTAAGATAAATGGCGTGGAATCTAAGATAAAGGGCATGGAAGCTAAGATGGATGATTTGAAGACAGACATGAAGACCGATTTGAAGACAGACATGGCAGATTTGAAGACAGATTTGACAAATTTTCTACAAGAAATACTTACTAATGGTGAAAAGGTTGTAAAGGAAACTCATGATGTGAACAAAAGAGTTGTTAATCATGATTCCATAGATGCTAATGTTGGATCGAAGACTCACCATATTCCAAAAATCGATATGAGGAAGTTTGATGGCAAGGATCCTGCCACATGGATATTACAGATGGAGCAATTCTTCGATCTCAATAATGTGCAAAACACACAAAAGGTACGTATGGCAACTTTATATTTGGAACCA

Fln Alignment:

Contig33807___FSAPVVLVHKKDGSWRMCPDYRELNKLTIKDKFPIPVIDELLDELHGSIYFTKLDLRSGYHQIRM
A9NWN2_______________YSTPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
623		20		80	0.995493
631		40	60		1.0
666			40	60	1.0
710	20		80		0.995493
747	75		25		0.996473
753		50		50	1.0
764		25		75	0.996473
846	87			12	0.992554
847	87		12		0.992554
848			12	87	0.992554
859		62		37	1.0
861	12		87		0.992554
874	87		12		0.992554
881	12		87		0.992554
883		25		75	1.0
916	60		40		1.0
962	80	20			0.995493
974	75		25		0.996473
975	75		25		0.996473
986		25		75	0.996473
991		25	75		0.996473
992	75	25			0.996473
1039	66	33			0.997452
1086			33	66	0.997452
1619			80	20	0.995493
1621		75		25	0.996473
1648	25		75		0.996473
1658	50	50			1.0
1673			25	75	0.996473
1685		88		11	0.923564
1714		75		25	0.996473
1738	50		25	25	0.995533
1739			75	25	0.996473
1740		25		75	0.996473
1744		75		25	0.996473
1887		33		66	0.997452
1888		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain