SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33806

Length: 2174 nt

UniGene Fasta

>sp_v3.0_unigene33806
CCCTCGGAAACCCCACCCTAATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGTTAAGGGCTTGCCCTCATTTGGCTATGCAGCTCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTTTTTGGTTGTTCAGAAATTCCTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGAATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGTGTCGCAGAGGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGGCCGCTCGGAAGGCTTTTGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAAGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCAGCTCTTGAAACCCTAGATAATGGAAAACCACTCACCCTTGCTCGTGCTGTCGATGTGACCGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTTGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATTAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTGTAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGATAAGGTTGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCCGCTGCTCAGAGCAACTTGAAAGCTGTAACTCTTGAACTCGGGGGAAAATCTCCTTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACATGGCGATATTTTTTAACATGGGACAAGTATGCTTCGCAGGATCGCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAGCAGGTGGTTGGCGATCCTTTCAAGCCAGAAGTTGATCATGGTCCTCAGATTGACAGGACACAATTTGAGAAAATACTGGAATACATAGAGCATGGGAAGCGAGAGGGAGCAAAGCTATTGACAGGAGGTAATCGCGTGGGTGAGCAAGGATTTTACATTGAACCGACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGCAAAGAAGAAATATTTGGACCAGTCATGTCCGTTTTCAAGTTTAGGACTATTGAAGAAGCCATTGAACTGGGGAATAAAACAATATATGGTTTAGCCGCTGGAATTGTGACGAAGAATATAGATACAGTCAATAGACTTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTGATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGAATTGGCAGAGAACAGGGTCTTGATGCTCTTAAGAATTATTTGGCAGTCAAGTGTGTGATAACTCCCCTCCATGATTCACCTTGGTTGTAGAATTCTGGGTTAATGTGTTTGGGAATTGTTTCATAGCATCATATATCACGTTTATTTGGGGTCGATTGCTACTTCGCATTTGATCTTGATGCTCTGTTTGGAGGATACAATATGAGTGAGATTGGCAGAGAGTCTTGATCCTCTTAAAAAAGATTTGGCAGTAGAGTGTGAGATAATTCCTCTTCATGATTCACCTTGGTTGCAGAACTACGTCTGACAATTCCTCTTCATGATTCACCTTGGTTGCAGAAATATGTTTTAATGGGTTTGTGAAATGTTTTATACCATCACATATCATAGGCGTCCTTTTTAT

Ace file of the UniGene sp_v3.0_unigene33806

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Sma3	Betaine aldehyde dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aminobutyraldehyde dehydrogenase.	EC:1.2.1.19	-	2.503e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		2.503e-07	%
Sma3	beta-Alanine metabolism	00410		2.503e-07	%
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	9.044e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		9.044e-18	%
Sma3	Pentose and glucuronate interconversions	00040		9.044e-18	%
Sma3	Ascorbate and aldarate metabolism	00053		9.044e-18	%
Sma3	Fatty acid metabolism	00071		9.044e-18	%
Sma3	Valine, leucine and isoleucine degradation	00280		9.044e-18	%
Sma3	Lysine degradation	00310		9.044e-18	%
Sma3	Arginine and proline metabolism	00330		9.044e-18	%
Sma3	Histidine metabolism	00340		9.044e-18	%
Sma3	Tryptophan metabolism	00380		9.044e-18	%
Sma3	beta-Alanine metabolism	00410		9.044e-18	%
Sma3	Glycerolipid metabolism	00561		9.044e-18	%
Sma3	Pyruvate metabolism	00620		9.044e-18	%
Sma3	Chloroalkane and chloroalkene degradation	00625		9.044e-18	%
Sma3	Propanoate metabolism	00640		9.044e-18	%
Sma3	Limonene and pinene degradation	00903		9.044e-18	%
Sma3	Metabolic pathways	01100		9.044e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		9.044e-18	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	1.865e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		1.865e-16	%
Sma3	Metabolic pathways	01100		1.865e-16	%
Sma3	Betaine-aldehyde dehydrogenase.	EC:1.2.1.8	-	3.313e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		3.313e-28	%

Source	Gene names
Sma3	ALD1; ALDH; ALDH10A8; ALDH10A9; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; ALDH5A; ALDH5F1; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At1g74920; At1g79440; At3g24503; At3g48000; At3g48170; BADH; BADH1; BADH2; B

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	succinate-semialdehyde dehydrogenase activity	GO:0004777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	betaine-aldehyde dehydrogenase activity	GO:0008802	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	aminobutyraldehyde dehydrogenase activity	GO:0019145	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glutamate decarboxylation to succinate	GO:0006540	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24503.1	ALDH2C4, ALDH1A, REF1 aldehyde dehydrogenase 2C4 chr3:8919732-8923029 REVERSE LENGTH=501	62%
RefSeq	Arabidopsis thaliana	NP_566749.1	aldehyde dehydrogenase 2C4 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002324977.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg:

Fln protein: MAGLDNGVGNGIVSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKAARKAFDKGPWPRMSGYERGRFLNKYADLVEQHIDELAALETLDNGKPLTLARAVDVTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFIKISPALACGCTVVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKAVTLELGGKSPLIIMDDADIEEAVNLAHMAIFFNMGQVCFAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFKPEVDHGPQIDRTQFEKILEYIEHGKREGAKLLTGGNRVGEQGFYIEPTIFSHVQEDMKIGKEEIFGPVMSVFKFRTIEEAIELGNKTIYGLAAGIVTKNIDTVNRLSRSIRAGVIWVNCYYAFDSDAPFGGYKMSGIGREQGLDALKNYLAVKCVITPLHDSPWL*

Protein Length: 500

Fln nts: CCCTCGGAAACCCCACCCTAATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGTTAAGGGCTTGCCCTCATTTGGCTATGCAGCTCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTTTTTGGTTGTTCAGAAATTCCTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGA_-_ATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGTGTCGCAGAGGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGGCCGCTCGGAAGGCTTTTGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAAGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCAGCTCTTGAAACCCTAGATAATGGAAAACCACTCACCCTTGCTCGTGCTGTCGATGTGACCGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTTGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATTAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTGTAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGATAAGGTTGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCCGCTGCTCAGAGCAACTTGAAAGCTGTAACTCTTGAACTCGGGGGAAAATCTCCTTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACATGGCGATATTTTTTAACATGGGACAAGTATGCTTCGCAGGATCGCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAGCAGGTGGTTGGCGATCCTTTCAAGCCAGAAGTTGATCATGGTCCTCAGATTGACAGGACACAATTTGAGAAAATACTGGAATACATAGAGCATGGGAAGCGAGAGGGAGCAAAGCTATTGACAGGAGGTAATCGCGTGGGTGAGCAAGGATTTTACATTGAACCGACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGCAAAGAAGAAATATTTGGACCAGTCATGTCCGTTTTCAAGTTTAGGACTATTGAAGAAGCCATTGAACTGGGGAATAAAACAATATATGGTTTAGCCGCTGGAATTGTGACGAAGAATATAGATACAGTCAATAGACTTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTGATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGAATTGGCAGAGAACAGGGTCTTGATGCTCTTAAGAATTATTTGGCAGTCAAGTGTGTGATAACTCCCCTCCATGATTCACCTTGGTTGTAG___AATTCTGGGTTAATGTGTTTGGGAATTGTTTCATAGCATCATATATCACGTTTATTTGGGGTCGATTGCTACTTCGCATTTGATCTTGATGCTCTGTTTGGAGGATACAATATGAGTGAGATTGGCAGAGAGTCTTGATCCTCTTAAAAAAGATTTGGCAGTAGAGTGTGAGATAATTCCTCTTCATGATTCACCTTGGTTGCAGAACTACGTCTGACAATTCCTCTTCATGATTCACCTTGGTTGCAGAAATATGTTTTAATGGGTTTGTGAAATGTTTTATACCATCACATATCATAGGCGTCCTTTTTAT

Fln Alignment:

Contig33806___VSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKAARKAFDKGPWPRMSGYERGRFLNKYADLVEQHIDELAALETLDNGKPLTLARAVDVTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFIKISPALACGCTVVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKAVTLELGGKSPLIIMDDADIEEAVNLAHMAIFFNMGQVCFAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFKPEVDHGPQIDRTQFEKILEYIEHGKREGAKLLTGGNRVGEQGFYIEPTIFSHVQEDMKIGKEEIFGPVMSVFKFRTIEEAIELGNKTIYGLAAGIVTKNIDTVNRLSRSIRAGVIWVNCYYAFDSDAPFGGYKMSGIGREQGLDALKNYLAVKCVITPLHDSPWL
B8LLF5_______________VTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
128		66		33	0.997452
172		33		66	0.997452
190		33		66	0.997452
191	33	66			0.997452
225		66		33	0.997452
226		66		33	0.997452
296		66	33		0.997452
316			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain