SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33783

Length: 462 nt

UniGene Fasta

>sp_v3.0_unigene33783
ATCACCTCCAGCGCCATCTCGTCTTCGTTTATGTGTAGTATTTGCTTGCCTTCGCCTTCGCCTTCACATTCACCTAGCTCAGGCGTGAGAATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTCTAGTGAGGAGGAGATTGATGGTGTGATGAAGGACGTGGACTCCAACAAAGACGGCTTCATCAGCTTCGACGAGTTCGTGGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCCTCGCTTCAGCTAATTGATGCCCACGCCGCCCCTTAATTAATAAATAAATAAATATTCCCCTAATCAGCGCTTAACTCTATCAATGTACTTTTAGTTTTAAATATATGCACATACAT

Ace file of the UniGene sp_v3.0_unigene33783

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	6.0e-39	94%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	94%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312460.1	predicted protein, partial [Populus trichocarpa]	4.0e-15	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: your sequence is shorter than subject: 111 - 166

Fln protein: MCSICLPSPSPSHSPSSGVRMASAVQCAALSSRRELEDVFRKFDTNGDGKISKSELSAILKCSSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASAN*

Protein Length: 112

Fln nts: ATCACCTCCAGCGCCATCTCGTCTTCGTTT_-_ATGTGTAGTATTTGCTTGCCTTCGCCTTCGCCTTCACATTCACCTAGCTCAGGCGTGAGAATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTCTAGTGAGGAGGAGATTGATGGTGTGATGAAGGACGTGGACTCCAACAAAGACGGCTTCATCAGCTTCGACGAGTTCGTGGCCGCCAACAGCAACGGCCTCAACGCCGCCCGTCTCATGCTAGGCCTCGCTTCAGCTAATTGA___TGCCCACGCCGCCCCTTAATTAATAAATAAATAAATATTCCCCTAATCAGCGCTTAACTCTATCAATGTACTTTTAGTTTTAAATATATGCACATACAT

Fln Alignment:

Contig33783___ASAVQCAALSSRRELEDVFRKFDTNGDGKISKSELSAILKCSSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASAN
O22429_______________ASAVQCATLPGRLELEDVFRKFDTNGDGKISKSELSAILKCRSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASAN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
153		50		50	1.0
186	20	20	60		0.99255
189	80		20		0.995493
201		80		20	0.995493
275			75	25	0.996473
289		63		36	1.0
320		81		18	0.999994
325		72		27	1.0
337		72		27	1.0
350		36	63		1.0
358			18	81	0.999994
380	25		12	62	1.0
389	57			42	1.0
400			28	71	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
48	65	GCCTTC GCCTTC GCCTTC	18
385	400	AATA AATA AATA AATA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain