SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33751

Length: 1131 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33751

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.24e-11	-

Source	Gene names
Sma3	At2g15650; At2g17490; F11I4_21; LOC_Os03g26290; LOC_Os03g27910; LOC_Os03g46450; LOC_Os03g61660; LOC_Os10g01750; LOC_Os11g05840; LOC_Os12g01780; LOC_Os12g05520; LOC_Os12g10890; LOC_Os12g23320; LOC_Os12g44200; OSIGBa0127D24.3; OSIGBa0134J07.9; OSJNBa0009K15

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: STOP codon was not found. Distance to subject end: 31 aas, your sequence is shorter than subject: 377 - 407

Fln protein: VAHNDEVSKLWHERFGHLNYRSLQHL*KENMVAGLPMVSCRDGVCSECVLGRHHRDSFEKTCLLARLSPFTACA**FMWSTSSCLILRLQVFLNFH**FLQTHLGILLKAQE*SI*HIFGLQGLH*KTIWTSNS*AKI**WRRICKNTFINFCTENGIQMQHTVPYTPQQNGVAEKKNRTLKEMANCMLQSKGLSLSFWAEAINCANYIINRTPTKALKNITPEEAWSSIKPDVSHFRVFGSEAWAHIPDEKHKALEPKSEKCTFVGYSEDVKGYRLIPFKSKNVIIRRDVKFDENISACEPSPADVPPLPISSTFENISSSDDESEDDNPPPPSQDPPSAPQLPKWVRATRDAAGDLAGDPTDQRRTRSQFDRASS

Protein Length: 378

Fln nts: GTTGCTCATAACGACGAAGTGAGCAAACTTTGGCATGAGCGATTTGGTCACTTAAACTATCGCTCTCTTCAGCATCTATGAAAAGAAAATATGGTGGCAGGTCTTCCAATGGTATCTTGCAGAGATGGTGTTTGTTCCGAATGTGTACTCGGAAGACATCATCGGGACAGTTTTGAAAAAACGTGCCTCTTGGCACGCCTCAGCCCCTTTACAGCTTGTGCATAGTGATTTATGTGGTCCACTTCCAGTTGCTTAATTCTCCGGCTGCAAGTATTTCTTAACTTTCATTGATGATTTCTCCAGACGCACTTGGGTATACTTCTTAAAGCTCAAGAGTGAAGTATTTAACACATTTTTGGCCTTCAAGGCCTTCATTGAAAAACAATCTGGACATCAAATTCTTAAGCTAAGATCTGATAATGGCGGAGAATATGTAAAAACACATTCATCAACTTTTGCACTGAGAATGGAATTCAAATGCAACATACTGTTCCATACACTCCACAACAAAATGGTGTAGCTGAAAAGAAAAATCGCACCTTAAAGGAAATGGCTAATTGTATGCTACAATCTAAAGGACTTAGTCTTAGTTTTTGGGCAGAAGCAATTAACTGTGCAAATTACATAATAAATCGCACTCCTACTAAGGCTCTAAAGAATATCACTCCAGAAGAAGCATGGAGCTCAATCAAACCAGATGTAAGTCACTTTCGTGTTTTTGGAAGTGAAGCATGGGCCCATATTCCAGATGAAAAGCATAAAGCTTTAGAACCTAAGAGTGAAAAATGTACTTTTGTTGGATATTCTGAAGATGTCAAAGGCTATAGACTTATTCCATTTAAGTCCAAAAATGTTATCATTAGAAGAGATGTAAAATTTGATGAAAATATATCGGCCTGTGAGCCTAGTCCGGCGGATGTGCCACCTCTCCCTATCTCTTCTACTTTTGAAAACATTTCTTCTTCAGATGATGAAAGTGAGGATGACAATCCTCCCCCACCATCTCAGGATCCTCCTTCAGCTCCTCAACTTCCAAAATGGGTCCGTGCTACTCGGGATGCAGCAGGTGATCTTGCCGGTGATCCTACAGATCAGCGACGTACACGTTCTCAATTTGATAGAGCCTCCTCT

Fln Alignment:

Contig33751___VAHNDEVSKLWHERFGHLNYRSLQHL*KENMVAGLPMVSCRDGVCSECVLGRHHRDSFEKTCLLARLSPFTACA**FMWSTSSCLILRLQVFLNF--------H**FLQTHLGILLKAQE*SI*HIFGLQGLH*KTIWTSNS*AKI**WRRICKNTFINFCTENGIQMQHTVPYTPQQNGVAEKKNRTLKEMANCMLQSKGLSLSFWAEAINCANYIINRTPTKALKNITPEEAWSSIKPDVSHFRVFGSEAWAHIPDEKHKALEPKSEKCTFVGYSEDVKGYRLIPFKSKNVIIRRDVKFDENISACEPSPADVPPLPISS
B8LKX7_______________VAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKA-FVEKQSGKSIKILRTDNG-------KEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDER---CIPSTKSSSLSPTSS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
566		66		33	0.997452
601	25	75			0.996473
612	50	50			1.0
636		75		25	0.996473
662		20		80	0.995493
670		80		20	0.995493
672	40		60		1.0
739		60		40	1.0
750	16		83		0.994512
818		25		75	0.996473
841		25		75	0.996473
843		25		75	0.996473
850	75	25			0.996473
869	33		66		0.997452
884	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain