SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33699

Length: 367 nt

UniGene Fasta

>sp_v3.0_unigene33699
TTACCTCCCGAGAGATTCAGACCGCTGTAAGGCTTGCTCTTCCAGGAGAACTCGCCAAGCATGCCGTCTCAGAGGGAACCAAAGCAGTTACCAAGTTTACCAGCGCTTGATCTTGGAGAAAAATCAGGGAAGAGAACACCTTTTATTGCATCCTGTAGCCCACACTGCCACGCAATTCGTATTGATCATTTATCTTAACGATCGTATCTTACATCAAAATGTATCCAAAGAGCTTGGGTTGAAGTTATGGTATAAAACGTTGATGGTATTCCCCTGTACCAGCATTCTTATAACGTTTCAAACTTTCAGCTAATACCATTATTGCAACTTTTTAAACTTCATTAATTCAGTGTCAAAATTTAGTGCC

Ace file of the UniGene sp_v3.0_unigene33699

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=1 Tax=Chlamydomonas sp. ICE-L RepID=E5G3R1_9CHLO	-	-	4.0e-10	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Histone H2B	-	-	5.539e-30	-

Source	Gene names
Sma3	At1g07790; At2g28720; At2g37470; At3g09480; At3g45980; At3g46030; At3g53650; At5g02570; At5g22880; At5g59910; CHLREDRAFT_100005; CHLREDRAFT_100008; CHLREDRAFT_100162; CHLREDRAFT_100236; CHLREDRAFT_100672; CHLREDRAFT_100722; CHLREDRAFT_102205; CHLREDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	mitotic chromosome condensation	GO:0007076	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G09480.1	Histone superfamily protein chr3:2914890-2915270 REVERSE LENGTH=126	2.0e-14	94%
RefSeq	Arabidopsis thaliana	NP_187559.1	histone H2B [Arabidopsis thaliana]	2.0e-14	94%
RefSeq	Populus trichocarpa	XP_002314196.1	histone 2, partial [Populus trichocarpa]	1.0e-14	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXC7

Fln msg: your sequence is shorter than subject: 36 - 135

Fln protein: TSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA*

Protein Length: 37

Fln nts: TTACCTCCCGAGAGATTCAGACCGCTGTAAGGCTTGCTCTTCCAGGAGAACTCGCCAAGCATGCCGTCTCAGAGGGAACCAAAGCAGTTACCAAGTTTACCAGCGCTTGA___TCTTGGAGAAAAATCAGGGAAGAGAACACCTTTTATTGCATCCTGTAGCCCACACTGCCACGCAATTCGTATTGATCATTTATCTTAACGATCGTATCTTACATCAAAATGTATCCAAAGAGCTTGGGTTGAAGTTATGGTATAAAACGTTGATGGTATTCCCCTGTACCAGCATTCTTATAACGTTTCAAACTTTCAGCTAATACCATTATTGCAACTTTTTAAACTTCATTAATTCAGTGTCAAAATTTAGTGCC

Fln Alignment:

Contig33699___TSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA
A9NXC7_______________TSREIQTAVRLALPGELAKHAVSEGTKAVTKFTSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain