SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33453

Length: 693 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33453

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Putative phi-1	-	-	1.341e-21	-

Source	Gene names
Sma3	AT4g08950; At1g35140; At1g35140/T32G9_32; At4g08950; At4g08950/T3H13.3; At5g09440; At5g09440/T5E8_240; At5g64260; EXO; GSVIVT00006171001; GSVIVT00015200001; GSVIVT00015201001; GSVIVT00015203001; GSVIVT00015204001; GSVIVT00015212001; GSVIVT00015213001; GSV

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	60%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
315		60		40	1.0
333		40		60	1.0
336		40	40	20	1.0
340	80		20		0.995493
342		80		20	0.995493
346		40	60		1.0
355	40		60		1.0
358	80		20		0.995493
363		80		20	0.995493
393		50	50		1.0
396		50		50	1.0
401		75		25	0.996473
420		25	50	25	0.995533
423	25	75			0.996473
430		50		50	1.0
435	50	50			1.0
444	50			50	1.0
457		75	25		0.996473
468		25		75	0.996473
477			50	50	1.0
491		75		25	0.996473
495			16	83	0.994512
532	57		42		1.0
536	28			71	1.0
540		28	71		1.0
546	14		85		0.993533
564		16		83	0.994512
579			83	16	0.999991
618		40	60		1.0
655	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain