SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33374

Length: 932 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33374

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0016 domain containing protein	-	-	5.0e-06	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Predicted membrane protein	-	-	7.946e-08	-

Source	Gene names
Sma3	AT5G36290; At5g36290; At5g36290/T30G6.16; GSVIVT00025100001; LOC_Os11g28300; MtrDRAFT_AC148289g29v2; OJ1770_H02.9; Os08g0528500; Os11g0472500; OsI_29993; OsI_36063; OsJ_33855; PHYPADRAFT_141924; PHYPADRAFT_46476; POPTRDRAFT_681242; POPTRDRAFT_814506; RCOM

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB5

Fln msg: Overlapping hits, possible frame ERROR between 506 and 464, and possible frame ERROR between 577 and 800, Distance to subject end: 43 aas,

Fln protein: MAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGxxxxxxxxxxxxxxxxSEIGDETFIIAALMAMRNPKSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMLTIKVLSTALGRIVPNLISRKHTNRAATGIYRSSMRCVSRQYL

Protein Length: 243

Fln nts: CATTTGATCTGACGCGGAAGGTTGTTTTGTATGGCGTTGCTTCCCATATAATTTTCCTTTGGCAAGGCTTTGTTCAGTGCGAACCCTCTAGCACAGTGCAAACCCTCCGAGCCCTTGGGAATCTAGAGCATCAGATTTGAGTGGGACGCACGGCGGCCTTGGATTTCAAGGTTTCGAGTTCAGAAAGGTCTGAAGTCAGGCAGAAG_-_ATGGCTGCCCGTTGCGAGTCCCATGTACGATTTTCTTGTGGTGTCTTTGCCATGGTCATTTTGGTGGCTGTGCTAAGAGTGTGTCCAGTAGCAGCTCAGATATCTGAGATGGAAAGAGGAGATGACACATCGCACCGGTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGCAAAGTTGGCTATAGATACATTGCAAAATGAATCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATGTTGACAATCAAGGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCAAGAAAACACACAAATAGGGCAGCTACAGGTATCTATAGAAGTTCTATGCGTTGTGTCTCTAGGCAGTATTTAT

Fln Alignment:

Contig33374___QKMAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGLxxxxxxxxxxxxxxVSEIGDETFIIAALMAMRNPKSIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMLTIKVLSTALGRIVPNLISRKHTNRAATGIY
A9NQB5_______________QKMAARCESHVRFCYGVFAMVILVAVLRACPVAAQISEMERGDDPSHRSSNDLVKLPWRKAKLAIDPLQNDSVMEQSDVKAASVSDGQxxxxxxxxxxxxxxVSEIGDETFIIAALMAMRHPKSIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLFVMTVLSTALGRIVPNLISRKHTNRAATVLY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
74		25	75		0.996473
344		83	16		0.994512
346		16	83		0.994512
415	66		33		0.997452
838	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain