SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33357

Length: 1011 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33357

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kunitz_legume domain containing protein	-	-	2.0e-28	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNR6

Fln msg: your sequence is longer than subject: 245 - 211

Fln protein: MVCVRLQTAHLKIIKSTSTVTGVAIAMASASAWGTSRKMVLLIQIVAVTAFMLFITLPLQVQGAVEADQRDVVDAEGHPVVLGREYYVLPAVAGSGGGGLALKMRVNNSCPMYVVQENSEKSRGLPLVFRHAKGLRGNYSSVIVQQHVNLNINMAAVTTCVQSTEWSVQNVANTTKRFIKASDTSSLFQIVKAIDGDGYNLYLCPCNCRLVCSPVGIYVDDGGNRWLVIGNSAEALRVQFHKNE*

Protein Length: 246

Fln nts: CATTGCTTCACTCATGTATATATATAGACCCATGAAGAGAGTACAAGTGAATATAT_-_ATGGTTTGTGTAAGACTGCAAACGGCACATTTGAAGATCATTAAAAGTACAAGCACAGTTACAGGAGTTGCAATTGCAATGGCTTCTGCATCAGCTTGGGGAACGAGTAGAAAGATGGTGTTGTTGATCCAAATAGTAGCAGTAACTGCATTTATGTTATTCATTACTCTGCCGTTGCAAGTGCAGGGTGCTGTGGAAGCAGATCAGCGAGATGTGGTGGATGCCGAAGGGCATCCTGTGGTGTTAGGGAGAGAATACTACGTTTTACCGGCTGTAGCTGGCAGTGGCGGTGGAGGTCTGGCACTGAAGATGCGCGTGAACAATAGTTGTCCAATGTATGTGGTGCAAGAGAATTCTGAGAAATCGAGGGGACTTCCTTTGGTGTTTAGGCATGCTAAGGGTCTTAGGGGAAATTATTCGTCTGTAATCGTGCAACAGCACGTCAATCTGAACATTAACATGGCGGCTGTAACTACCTGCGTTCAATCCACTGAGTGGTCTGTCCAAAACGTTGCCAATACCACCAAACGCTTCATCAAAGCTTCGGACACCTCTTCGTTATTTCAGATTGTAAAGGCGATTGACGGAGATGGTTACAATCTGTATTTGTGTCCTTGCAATTGCAGACTTGTTTGTAGCCCAGTCGGAATTTACGTTGACGACGGTGGGAACAGGTGGCTGGTTATCGGTAATTCGGCGGAGGCTCTGCGTGTCCAATTTCATAAGAATGAATGA___ATGAGAGGCAACCGATGAAAACAGAGTCATGGTGTCGTAGAGAGCTGTATATATGTTGTTAGTGCTATTCCACCAATAAATAATGCGCTCTGCAGTTTTTTTGGGCATGTAAATGTCTAGAGAATGACCGTGTGGTCATTCTCTATTTATCCCATTTACAATAATAAGAAGAGATTTCGATTAAATTTATATGATAATGATTTCTTGTTTTCGTTTTCGG

Fln Alignment:

Contig33357___MASASAWGTSRKMVLLIQIVAVTAFMLFITLPLQVQGAVEADQRDVVDAEGHPVVLGREYYVXXXXXXXXXXXXXXKMRVNNSCPMYVVQENSEKSRGLPLVFRHAKGLRGNYSSVIVQQHVNLNINMAAVTTCVQSTEWSVQNVANTTKRFIKASDTSSLFQIVKAIDGDGYNLYLCPCNCRLVCSPVGIYVDDGGNRWLVIGNSAEALRVQFHKNE
B8LNR6_______________MGSTSAWGTRRTMMQMV-MVAITAFMLFINLPLQVQGAA-----DVVDAEGNPVLVGGEYYVLPAVAGSGGGLTL-KMRVNNSCPLYVAQENSEKSRGLPVVLRPAKGQRGNYSSVIVQEHVNLNVNMAAVTACVQSTAWSVQNDANTTKRFIKASDSSSLFQIVKAIDGDGYVLYFCPCNCRLVCTKVGIYVDGDEKRWLVINNSGEALRVQFQKNE

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
122	60	40			1.0
142		40	60		1.0
144			20	80	0.995493
152		80		20	0.995493
157			60	40	1.0
174			57	42	1.0
189	28		71		1.0
191	28		71		1.0
192	14		85		0.993533
291	25	75			0.996473
563	66		33		0.997452
568	33			66	0.997452
572		66	33		0.997452
587		80		20	0.995493
602	20		80		0.995493
605		40	20	40	1.0
606	80		20		0.995493
608		80		20	0.995493
624	80		20		0.995493
668		50		50	1.0
694		50	50		1.0
696	50	25	25		0.995533
698	50		50		1.0
719		70		30	1.0
752	10		90		0.90298
758	10		90		0.90298
759			60	40	1.0
764			90	10	0.90298
767	40			60	1.0
773	70	30			1.0
799	40		60		1.0
802	80		20		0.995493
809	66			33	0.997452
820	66		33		0.997452
840	66		33		0.997452
879		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
782	795	GAAT GAAT GAAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain