SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33343

Length: 549 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene33343
ATGGCCTTTTTACGGAAATTGTCTTTTCTCTTTTGCAGAGGGATGGATTTGATGCTCCATGCTCACGTTTGTCACGCAGAGGGGGTATATAATATAATATATGTAGCTCAGAGCTAGGCTTAGAAGCAGTTCTGGGTGGGGTTTGCTGCTGATGAAAACACACGTGTTTGCTGGTGAAAAAAGCGGTCCATGTTTGCACGGTTGTGTAGTGGGCAGCTAGCGAGTCATGGCAAATGGGTCACTGGGTAAAAGCCTACGACTTCATACTATTCGCATACCAGGTGATGGTAGATGTTTGTTTCGGGCTGTTGCTTATGGTGCCTGCTTGAGAAAGGAAGAACCCCCTCCAAATGAGAGCACCCAGAGAGAACTTGCAGATGAATTGCGGAGCAAAGTAGCAGATGAATTTCTAAAGAGACGGAAAGAGACGGAATGGTTCTTGGAGGGAGATTTTGATACTTATGTCAAGCAGATTAGGAAGCCTTATGTTTGGGGTGGAGAATCAGAGCTACTGATGGCTTCACATGTGCTGCAAATGCCAATAACAGT

Ace file of the UniGene sp_v3.0_unigene33343 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine proteinases-like protein [Arabidopsis thaliana] ref\|NP_001078307.1\| Cysteine proteinases-like protein [Arabidopsis thaliana] sp\|Q8LBZ4.1\|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gb\|AAM63953.1\| unknown [Arabidopsis thaliana]	-	-	1.0e-35	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Putative uncharacterized protein At3g57810	-	-	2.694e-09	-

Source	Gene names
Sma3	At3g57810; B1065G12.4; GSVIVT00034988001; OJ1134_H03.35; OSJNBa0025J22.25; Os01g0900900; Os08g0506000; Os09g0487700; OsI_04808; OsI_29805; OsI_31841; OsJ_04432; OsJ_27869; OsJ_29825; P0035F12.18; PHYPADRAFT_125807; PHYPADRAFT_211921; PHYPADRAFT_33766; PHY

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Mur ligase, central	IPR013221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57810.2	-	1.96182e-44	66%
RefSeq	Arabidopsis thaliana	NP_567058.2	Cysteine proteinases-like protein [Arabidopsis thaliana]	9.80909e-45	66%
RefSeq	Populus trichocarpa	XP_002323302.1	predicted protein [Populus trichocarpa]	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 44 aas, your sequence is shorter than subject: 182 - 411

Fln protein: WPFYGNCLFSFAEGWI*CSMLTFVTQRGYII*YM*LRARLRSSSGWGLLLMKTHVFAGEKSGPCLHGCVVGS*RVMANGSLGKSLRLHTIRIPGDGRCLFRAVAYGACLRKEEPPPNESTQRELADELRSKVADEFLKRRKETEWFLEGDFDTYVKQIRKPYVWGGESELLMASHVLQMPIT

Protein Length: 183

Fln nts: ATGGCCTTTTTACGGAAATTGTCTTTTCTCTTTTGCAGAGGGATGGATTTGATGCTCCATGCTCACGTTTGTCACGCAGAGGGGGTATATAATATAATATATGTAGCTCAGAGCTAGGCTTAGAAGCAGTTCTGGGTGGGGTTTGCTGCTGATGAAAACACACGTGTTTGCTGGTGAAAAAAGCGGTCCATGTTTGCACGGTTGTGTAGTGGGCAGCTAGCGAGTCATGGCAAATGGGTCACTGGGTAAAAGCCTACGACTTCATACTATTCGCATACCAGGTGATGGTAGATGTTTGTTTCGGGCTGTTGCTTATGGTGCCTGCTTGAGAAAGGAAGAACCCCCTCCAAATGAGAGCACCCAGAGAGAACTTGCAGATGAATTGCGGAGCAAAGTAGCAGATGAATTTCTAAAGAGACGGAAAGAGACGGAATGGTTCTTGGAGGGAGATTTTGATACTTATGTCAAGCAGATTAGGAAGCCTTATGTTTGGGGTGGAGAATCAGAGCTACTGATGGCTTCACATGTGCTGCAAATGCCAATAACAGT

Fln Alignment:

Contig33343___IPGDGRCLFRAVAYGACLRKEEPPPNESTQRELADELRSKVADEFLKRRKETEWFLEGDFDTYVKQIRKPYVWGGESELLMASHVLQMPIT
B8LMJ1_______________IPGDGRCLFRAVAHGASLRSGKPAPNESLQRELADELRTRVADELLKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQMPIT

SSRs (tot: 1)

Start position	End position	Sequence	Length
449	463	TATAT TATAT TATAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain