SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33328

Length: 1014 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33328 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GST n=1 Tax=Ginkgo biloba RepID=A7E1W9_GINBI	-	-	2.94273e-44	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	GST6 protein	-	-	1.818e-09	-

Source	Gene names
Sma3	GSVIVT00000141001; GSVIVT00028452001; Os09g0367700; OsI_31090; OsJ_29101; P0441A12.52; P0564H06.1; POPTRDRAFT_550393; POPTRDRAFT_550400; POPTRDRAFT_823067; gst6;

Source	GOs	Term	Type	e value	Identity
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	0.0	-
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB6

Fln msg:

Fln protein: MVRRGEMDSVGVKLLLIRSSPFAMSCALALRHKGVKFEEVEENLRARSDLLLRSNPVYRQVPVLIHNGKPVSQSLVILEYIEEAWPPSDTTPSLLPGSPYDRALSRFWADFINKKFIETGLKLMKRFGEEHAIARKEIVEQFITLEEGMRAIGSVGPYFLGQKMSLADLALVPLVPWLTSFEALGDLKFPGPEQCGRMHEWLNAMREDPNVVASVPTADWMLNYTLNFREYIKEHYPGGL*

Protein Length: 242

Fln nts: ACCTAGAAGCAGCCAATCTGGCAAGACTCTATTCCTATATATATAAATGTTAAGGAGCCCGAG_-_ATGGTGAGACGAGGCGAAATGGATTCTGTAGGAGTGAAGCTGCTGTTGATAAGGTCCAGCCCCTTTGCGATGAGCTGCGCCCTTGCTCTCAGGCACAAGGGCGTCAAATTTGAGGAGGTGGAGGAAAACCTGAGAGCTAGGAGCGACCTCCTCCTGCGATCGAATCCTGTGTACAGGCAGGTCCCCGTGCTCATCCACAATGGAAAACCCGTCTCCCAGTCCCTGGTCATACTCGAGTACATCGAGGAAGCATGGCCGCCTTCCGACACCACGCCCTCACTTCTGCCGGGCAGCCCTTACGACAGGGCGCTTTCTCGATTCTGGGCAGACTTCATCAACAAGAAGTTCATAGAGACAGGGCTCAAGCTCATGAAGCGGTTCGGGGAAGAGCATGCGATCGCGCGGAAAGAAATCGTGGAGCAGTTTATAACGCTGGAGGAGGGGATGAGGGCTATCGGATCGGTGGGGCCTTATTTCTTAGGCCAGAAGATGAGCTTGGCGGATTTGGCTCTTGTGCCTCTGGTTCCATGGCTTACCTCATTTGAAGCCCTAGGCGACTTGAAATTCCCTGGGCCGGAGCAGTGCGGCCGTATGCACGAATGGTTGAACGCTATGCGAGAGGATCCCAATGTGGTGGCCTCCGTTCCCACGGCAGATTGGATGCTCAATTACACTCTGAATTTCCGCGAATATATTAAAGAGCATTATCCAGGTGGACTGTAA___GCAGAGATACCACCTGTTATGTGGCTATTTTAGCTACACTAAACTGTAATTTCCTGTTCTGGCTATTTCAGCGACACTAAGCTTTAATTTCCCGCAGTTTGGAGTTTTAAAGTAGTGGTAATATTAGTGGAGTATTTCAGCTCCACTAAGCTGTAATTTCCTGTACTCTGGGGTTTCGAGTTGTGGTAATAATAATGTGGTGTGAGGTAGTCACCATAAGTTGTTGCT

Fln Alignment:

Contig33328___VKLLLIRSSPFAMSCALALRHKGVKFEEVEENLRARSDLLLRSNPVYRQVPVLIHNGKPVSQSLVILEYIEEAWPPSDTTPSLLPGSPYDRALSRFWADFINKKFIETGL-KLMKRFGEEHAIARKEIVEQFITLEEGMRAIGSVGPYFLGQKMSLADLALVPLVPWLTSFEALGDLKFPGPEQCGRMHEWLNAMREDPNVVASVPTADWMLNYTLNFRE
A9NQB6_______________VKVINLWVSLFGMRVMIGLEEKGVAYEYQEENLASKSDLLLQMNPVHKQVPVLIHNGRPVCESLIILEYIEEAWPSSN---PLMPSNPYDRALARFWADFLNKKFFEDAFYGILKCTGEAQEEGKRYML-QYLGLLEGELSAGGSKPYFGGEQFGFVDIVFIPYACWFHALETLGKWKIPWESEFPRLQQWMKTCMERESVNKILPDPQKVLEYAVQFRK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
132		75		25	0.996473
136	20		80		0.995493
198	80		20		0.995493
277	50			50	1.0
353			33	66	0.997452
354	33	66			0.997452
360		33		66	0.997452
362	33	66			0.997452
365		66		33	0.997452
367	33		66		0.997452
751	85			14	0.993533
757	11		88		0.923564
855		12		87	0.992554
860		87		12	0.992554
895	4		95		0.999973
897	97	2			0.971188
912	2		97		0.971188
923	97	2			0.97849
937	12		88		1.0
942		73	26		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain