SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33300

Length: 908 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33300

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phi class glutathione transferase n=1 Tax=Cathaya argyrophylla RepID=B8YDC4_9CONI	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Glutathione S-transferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glutathione metabolism	00480	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	%
Sma3	Drug metabolism - cytochrome P450	00982	%

Source	Gene names
Sma3	APIC; AcGSTF1; At1g02920; At1g02930; At1g02950; At1g49860; At2g02930; At2g30860; At2g30870; At2g47730; At3g03190; At3g62760; At4g02520; B1039D07.2; B1039D07.43; B1039D07.6; B1045D11.21; B67C16.10; ERD11; ERD13; F10F5.9; F17A22.12; F22D16.5; F22D16.6; F22D

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30860.1	ATGSTF9, GLUTTR, ATGSTF7, GSTF9 glutathione S-transferase PHI 9 chr2:13139132-13140057 FORWARD LENGTH=215	48%
RefSeq	Arabidopsis thaliana	NP_180643.1	glutathione S-transferase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002327563.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	G %	T %	Probability
225	71		28	1.0
253	28	71		1.0
324	14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
871	888	TAAA TAAA TAAA TAAA TA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain