SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33151

Length: 1387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33151 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Laccase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.152e-34	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.152e-34	%
Sma3	Metabolic pathways	01100		1.152e-34	%

Source	Gene names
Sma3	At1g18140; At2g29130; At2g30210; At2g38080; At2g40370; At2g46570; At3g09220; At5g01040; At5g01050; At5g01190; At5g03260; At5g05390; At5g07130; At5g09360; At5g48100; At5g58910; At5g60020; B1045D11.30; B1088C09.5; F13A10.10; F15A17_290; F16M14.1; F3L24.9; F

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05390.1	LAC12 laccase 12 chr5:1594753-1597042 FORWARD LENGTH=565	58%
RefSeq	Arabidopsis thaliana	NP_196158.1	laccase 12 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002315131.1	laccase 90c [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: your sequence is shorter than subject: 355 - 570

Fln protein: RRDLGCHSTYLLRMVNAALNSAHFFKIAGHKFTVVAVDASYTKPYKTDVIVIAPGQTTDVLVTADQPVGRYYMAARDYNNQGAGDFDNTTTTAIFEYVGHQNTRPILPKLPYYNDTAVVTRFSTALRSLNSKDFPVDVPHSIDDSLIATVGLGLLPCEAGNTCEGPNGTRLSASMNNMSFVLPSVAILQAYYFGINGVFMRNFPSKPPLRFNYTGDDIPKRLWAPDLATKVRVVTYNSTVQLVYQTTNIFVAENHPMHLHGYDFYVVGQGFGNYNPKTDPLKFNLVDPPKRNTVIAPISGWAAIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVKNGRGPLATLEPPPADLPKC*

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTACCTTCTACGGATGGTCAATGCTGCACTCAATAGTGCCCACTTTTTCAAGATCGCAGGCCACAAATTTACAGTTGTAGCTGTGGATGCTTCCTACACCAAGCCATACAAAACAGATGTAATCGTCATTGCTCCCGGTCAGACTACGGATGTTCTTGTCACCGCCGACCAACCAGTGGGCAGATACTATATGGCTGCCAGAGATTATAATAATCAGGGAGCAGGCGATTTCGATAACACTACAACTACAGCCATTTTTGAGTACGTGGGACATCAAAATACACGTCCCATTTTACCTAAGCTTCCATACTACAATGACACTGCGGTCGTCACTAGATTTAGTACAGCACTGCGAAGCCTAAATTCCAAAGACTTCCCAGTGGACGTTCCACATAGCATAGATGATAGCCTCATCGCCACAGTCGGGCTGGGATTACTTCCATGTGAAGCTGGAAACACCTGTGAAGGCCCCAACGGAACAAGGCTCAGTGCAAGCATGAACAACATGTCCTTTGTATTGCCCAGCGTGGCCATACTGCAAGCTTATTATTTCGGTATTAATGGTGTGTTTATGAGGAATTTTCCATCAAAACCTCCCCTTAGATTCAACTATACAGGGGACGATATTCCCAAAAGACTTTGGGCTCCTGACCTGGCAACAAAGGTGAGAGTTGTCACCTACAACTCAACAGTACAACTGGTGTATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCAATGCATCTTCATGGTTACGATTTTTACGTGGTGGGGCAAGGTTTCGGGAACTATAACCCAAAGACCGACCCGCTCAAGTTTAATCTGGTTGATCCTCCAAAGCGCAACACCGTCATCGCTCCAATAAGCGGATGGGCTGCCATCAGATTCAAAGCTGACAATCCAGGAGTGTGGTTTCTGCACTGCCATCTAGACGACCATTTAGCATGGGGATTGAATATGGTGTTCCTAGTGAAGAATGGTCGCGGTCCTTTGGCAACATTGGAGCCTCCCCCTGCAGACCTTCCCAAGTGCTAG___AGAGAGAAGGAAATATCAATAACCATATCAGAATACTTCCCGACTACAAGGATCTGGACACATTGAAGGATCGTTATTTATTTAAAATCTACGGCTATTAGTGGCGTAGTTAGAATAATCGATGTAAAATCTACGGCCATTAGTGGCGTAGATAGTGTAAACGATGTAAAATCTACGTCCATTAGTGGCGTAGTTAAAATAAGCCTCAAACATGAAGGCGAACTGTGTTTTTTATTGGTGGGATTGCTAACAGCACATGTATAGGCTAGGATTGTCTTTTATTCTGGTCAGGATTGTTATTTGGGATATTGAATTCACGTGA

Fln Alignment:

Contig33151___TYLLRMVNAALNSAHFFKIAGHKFTVVAVDASYTKPYKTDVIVIAPGQTTDVLVTADQPVGRYYMAARDYNNQGAGDFDNTTTTAIFEYVGHQN-TRPILPKLPYYNDTAVVTRFSTALRSLNSKDFPVDVPHSIDDSLIATVGLGLLPCEAGNTCEGPNGTRLSASMNNMSFVLPSVAILQAYYFGINGVFMRNFPSKPPLRFNYTGDDIPKRLWAPDLATKVRVVTYNSTVQLVYQTTNIFVAENHPMHLHGYDFYVVGQGFGNYNPKTDPLKFNLVDPPKRNTVIAPISGWAAIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVKNGRGPLATLEPPPADLPKC
C0PRA7_______________TYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMHLHGYNFYVIGEGFGNYNPKTDPLKFNLVDPPERNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
361			25	75	0.996473
382		20		80	0.995493
384		40		60	1.0
403		20		80	0.995493
404		40		40	1.0
584		60		40	1.0
634	11	88			0.923564
739		83		16	0.994512
807		85	14		0.993533
810	71			28	1.0
898		66	33		0.997452
922		33	66		0.997452
981	66		33		0.997452
995	40		60		1.0
1033		60		40	1.0
1076	75	25			0.996473
1100		75		25	0.996473
1119			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain