SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33074

Length: 491 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33074 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_36.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CU91_VITVI	-	-	3.0e-36	97%
FL-Next	sp=Ubiquitin; Avena sativa (Oat).	-	-	0.0	100%

Source	Gene names
Sma3	AT5G03240; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; EgUbi; FUBI1; GSVIVT00006610001; GSVIVT00028185001; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; MICPUCDRAFT_17541; MICPUCDRAFT_289

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	100%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002333648.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
155	25		75		0.996473
156		75		25	0.996473
163		75		25	0.996473
191	25		75		0.996473
206	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain