SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33041

Length: 1038 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33041 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	4.0e-18	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: your sequence is shorter than subject: 305 - 618

Fln protein: HCYTILDLNIPAL*YLNLEWCSNVKELAPQIARQRSLKNLFMSFTELCFMGDLCNLEVLHIRSRLAELQVPHSPKLKCLRVSFGQFTQMTDLVFVECGIEYLPQGLLNLNNLRYLRVEDCPLREFPIKPDEGEAEGGKAWNQLESLVLKGAKMSEVAFPKGVCPNLQTLFIQSCQELRGIRGLCNLSKLGSLNIQYCVKVEDLGSLENLRSLSRVSVAGCRRLRSIQGLGQQLTQLTELQVSGCHEMVGLPGVEQCMRLYCLYARDYPKLQWGGGVLQQLRPRLHRLYRDIDVIPYKRRKLRGD*

Protein Length: 306

Fln nts: CATTGCTACACCATTCTAGATTTAAATATTCCAGCGTTGTAATATTTAAATCTAGAATGGTGTAGCAATGTGAAAGAATTAGCTCCTCAAATCGCACGTCAACGGTCCTTGAAAAATTTATTTATGTCATTCACAGAGCTATGCTTTATGGGAGACCTCTGCAATTTGGAAGTTCTGCATATACGTTCGAGGTTGGCGGAGTTACAAGTACCCCATTCACCGAAATTGAAATGCCTGCGCGTTTCATTCGGACAGTTTACTCAGATGACAGATTTGGTGTTTGTGGAATGTGGGATAGAATACTTACCACAAGGCCTTTTGAATTTGAACAATCTGAGATATCTAAGAGTAGAGGATTGTCCGTTGCGGGAATTTCCAATTAAACCTGATGAAGGAGAAGCAGAAGGCGGGAAAGCGTGGAATCAATTAGAGAGCTTAGTGCTTAAGGGTGCAAAAATGTCGGAGGTAGCCTTTCCGAAAGGCGTTTGCCCAAACCTTCAAACTCTGTTCATCCAGAGTTGTCAGGAATTAAGGGGAATACGAGGGCTTTGTAATCTGTCCAAACTTGGAAGCCTCAACATCCAATATTGTGTAAAAGTAGAGGACCTCGGAAGTCTTGAAAATTTGAGGTCTTTGTCGAGGGTCAGTGTTGCAGGGTGTAGGAGGCTCAGGAGCATACAAGGATTGGGGCAGCAGCTTACACAGCTTACAGAGCTACAGGTTAGTGGATGCCATGAGATGGTGGGGTTGCCGGGTGTGGAACAATGCATGAGGTTGTATTGCCTGTATGCTCGTGACTACCCCAAACTGCAGTGGGGTGGAGGAGTACTTCAGCAGCTGCGCCCCCGACTTCACCGACTTTATCGGGATATCGATGTAATACCATACAAAAGACGCAAATTGCGTGGAGATTAG___TGAATGCAATGAGTGGTTAATGCTTGTTAAAATTGTGTGAGTAGTGTTGGACTACATTTGTAGAGACCATGGCGGTCAAAATTAAATTAATAGTTATTACATTTCAATGCGCAGTGCTGATAT

Fln Alignment:

Contig33041___NIPAL*YLNLEWCSNVKELAPQIARQRSLKNLFMSFTELCFM----GDLCNLEVLHIRSRLAE--------------LQVPHSPKLKCLRVSFGQFTQMTDLVFVECGIEYLPQGXXXXXXLRYLRVEDCPLREFPIKPD-EGEAEG-----GKAWNQLESLVLKG---------------AKMSEVAFPKGVCPNLQTLFIQSC---------------------QELRGIRGLCNLSKLGSLNIQYCVKVEDLGSLENLRSLSRVSVAGCRRLRSIXXXXXXXXXXXXXQVSGCHEMVGLPGVEQCMRLYCLYARDYPKLQWGGGVLQQLRPRL
B8LMZ7_______________NISTLEYLNLSDCKSVQVLPRQLAHQPSLEILSLSETNLKELPGDIGNLSSLEELSLGNSLLEMLPCSLGHLSSLKKLWVCDSPELKSLPDSLGQLTQLSTLWVGGCGIQSLPPEVAKMNNLVELRVRECPLRELLLKNQAEGEEETLADPTGRRESNLDSSVANAQQQCMYRLGYLQLWQTEISHISFGEGVCPNLKQLDIRSCAHLVDVGALPPTLIRLKLYKCRRLSKIEGICNLTKLRKLNIRKCIEVEDLPSLERLTSLEKFSADECSKLKRI-KGLGQLAALRILYMSSCKALEELTGVETLRSLEKLNVVNCRQLQWGEGVVEQLGRQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain