SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32843

Length: 1072 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32843

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione-S-transferase n=4 Tax=Picea RepID=Q2Q9T2_PICMA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78370.1	ATGSTU20, GSTU20 glutathione S-transferase TAU 20 chr1:29484428-29485204 REVERSE LENGTH=217	53%
RefSeq	Arabidopsis thaliana	NP_177958.1	glutathione S-transferase TAU 20 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002300483.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB6

Fln msg: Overlapping hits, possible frame ERROR between 763 and 732,

Fln protein: MSTVFKCKEQVKVLNLWVSLFGMRVLIALEEKGVTYEYQEENLDSKTDLLLQMNPVHKQVPVLIHNGRPVSESLIILEYIEEAWQNTNPLMPSNPYDRALARFWADFLNKKFFQDAFYGILKCTGEAQEEGKRHMLQYLGLLEGELSAVGGKPYFGGDQFGFVDIVCIPYACWFHALETLGKWKIPWESEFPKLQQWMTTCMERExxxxxxxxxxxxVLEYAVQFRKRFVSFE*

Protein Length: 235

Fln nts: TATCTGTGCTTTTCGAGAAGAACTATTGGCTATAAGTATTTGCGTAAACCAAGCCAGAAGGTCAGGCATCCATTCACTCGTACCTGTGCGTTTCCTGTAATTTGCGGTATTTCAA_-_ATGTCGACAGTGTTCAAATGCAAGGAACAGGTGAAAGTGTTAAATCTATGGGTTAGTCTCTTCGGCATGCGTGTCTTGATTGCACTAGAAGAGAAAGGGGTGACATATGAATACCAGGAAGAGAATCTTGACTCCAAGACTGACCTACTGCTGCAAATGAATCCTGTCCACAAGCAGGTACCTGTCCTCATCCACAATGGCAGGCCTGTCTCTGAGTCTCTCATCATTCTCGAATATATCGAGGAGGCCTGGCAGAACACTAATCCTCTGATGCCCTCCAACCCTTATGACCGAGCTCTTGCAAGATTCTGGGCAGACTTTCTAAACAAGAAGTTTTTCCAAGACGCATTTTATGGCATTTTGAAATGTACAGGAGAAGCCCAAGAAGAGGGTAAGCGCCATATGTTACAATACCTGGGATTGCTAGAAGGGGAGCTGTCAGCAGTAGGAGGTAAGCCTTACTTTGGAGGAGACCAGTTTGGGTTCGTGGACATTGTATGCATTCCCTATGCGTGTTGGTTCCATGCATTGGAAACGCTGGGAAAATGGAAGATACCATGGGAAAGTGAGTTCCCAAAGCTCCAGCAGTGGATGACGACATGCATGGAGAGAGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTTGGAATATGCCGTTCAATTTAGGAAGAGATTTGTCAGCTTCGAATGA___CTGGAAATCATAATTAGTTAGAGTGGCCTAGTATGGTGCTGATATGAATGAATTTAGTTCGAGCCTTATGTTGGTTCTAGGCCTGTGGACATGTTTCTTCGCGCTGCCACAGAATTTATGACTATCTGCAGATAGACTAAAATCCCGACGGGTGTATTCTCTTTTTAATATAGCAGCAAGTTTCTCTTTCACGATGAGCTGTATTACCACATAAATTATTGAGTAGATTATCAAAATTCTATTTAAATATGAATACG

Fln Alignment:

Contig32843___MSTVFKCKEQVKVLNLWVSLFGMRVLIALEEKGVTYEYQEENLDSKTDLLLQMNPVHKQVPVLIHNGRPVXXXXXXXXXXXXAWQNTNPLMPSNPYDRALARFWADFLNKKFFQDAFYGILKCTGEAQEEGKRHMLQYLGLLEGELSAVGGKPYFGGDQFGFVDIVCIPYACWFHALETLGKWKIPWESEFPKLQQWMTTCMERExxxxxxxxxxxVLEYAVQFRKRFVSFE
A9NQB6_______________MSKLSKGDEQVKVINLWVSLFGMRVMIGLEEKGVAYEYQEENLASKSDLLLQMNPVHKQVPVLIHNGRPVCESLIILEYIEEAWPSSNPLMPSNPYDRALARFWADFLNKKFFEDAFYGILKCTGEAQEEGKRYMLQYLGLLEGELSAGGSKPYFGGEQFGFVDIVFIPYACWFHALETLGKWKIPWESEFPRLQQWMKTCMERExxxxxxxxxxxVLEYAVQFRKRFVSFE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
101	88		11		0.923564
132	82		17		1.0
396	81	18			0.999994
414		60		40	1.0
430		87		12	0.992554
562			66	33	0.997452
765	50		50		1.0
819		33		66	0.997452
870		33		66	0.997452
993	15		84		1.0
1006	15			84	0.999986
1018	16		83		0.994512
1056		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain