SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32842

Length: 1362 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein n=8 Tax=Spermatophyta RepID=B7F9R7_ORYSJ	-	-	85%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Ribosomal protein L1	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L1	IPR002143	-	0.0	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27530.1	PGY1 Ribosomal protein L1p/L10e family chr2:11763443-11764570 REVERSE LENGTH=216	86%
RefSeq	Arabidopsis thaliana	NP_850104.1	60S ribosomal protein L10a-2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002328252.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNS9

Fln msg:

Fln protein: MSKLQSDALREAISQIMGDTKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPNRVF*

Protein Length: 218

Fln nts: AAAAGAACCATTAGAAGCATTCCCAAAATTGAAGAGTTTATGCCAATCTAAATATCGGTCGCCCCACCTCTTACAATCCCCCCGTCCGTCACATGAATGCCATGAAATCTATGTAACCTGAAGCCGTAGTAGCTACATTAGACCTTAACATGTAATTCATGTAACCCTAAATCTCTGTGGTCACATTAGCCCTATATAATGTCAGTATATTAGGGTTTTTATCTCTCAGTTCGATCCTAAACCCTAATCGAGGGCCGGTCGTGTCTAGGAGAGCGCGTGCAGAGGAAGGCGCAAGGCCAGGGCAAAA_-_ATGAGTAAGCTTCAGAGTGATGCGTTGAGGGAGGCCATCTCCCAGATCATGGGAGATACTAAGGAGAAACAACGTAAATTCACAGAGACAATCGAGTTACAGATTGGCCTAAAGAATTATGATCCTCAAAAGGACAAGCGGTTCAGTGGTTCTGTTAAGTTACCTCACATTCCTCGCCCTAAGATGAAGGTTTGCATGCTTGGAGATGCTCAGCATGTGGAAGAGGCTGAAAAATTAGGCTTGGATTATATGGATGTTGAAGGACTAAAGAAAATGAACAAAAACAAGAAATTGGTTAAGAAACTTGCAAAGAAATATCATGCCTTTCTTGCTTCAGAAGCAATCATTAAACAGATACCTCGGCTTCTTGGGCCTGGTCTCAACAAGGCTGGCAAATTTCCTACCCTTGTATCTCACCAAGAGTCCCTGGAGGGAAAAGTGAATGAAACCAAAGCAACTGTCAAATTTCAATTAAAAAAGGTTCTATGCATGGGGGTTGCTGTGGGGAACTGTGGAATGGAAGAAAAACAGATTTTTCAGAATGTGCAATTGAGTGTTAACTTCCTTGTATCACTACTGAAGAAGAACTGGCAGAATGTTAGGTGCCTATATTTGAAGAGTACCATGGGAAAGCCTAACCGTGTTTTCTGA___GTGGAGCAGAGTGGAGATATTATAATGACACTTTATTTTTGTGTAACTATTAAACATAGGTTATTTTTACTTAATTTCTACCAAACTAATTGATTTTGATGCAAATATTGAGGAATTGAGAAATGTAAGTGCTGGTAAATTGCTGTTTTGAACAATAGAATTTGTTTTTCTATTGGAATAGCTCGGGTCATGGTTTTAGACTTTAAGCCTGACATTCAATGTTCTAAAATCATGTTGTGGTATTGAAGTCTATCTAGATTTTTTAATAGTGACATTATTGTTAGAGAGCCTTTTGTTCAATTGGAAATTATCTCATGCAAGGGGATTGTTTCTTGTGTTGAATTTATTTTGATTGTGTTCCTGATATGCCTATCTTGTGGCATCTTGGAATTGTTTCTACAACT

Fln Alignment:

Contig32842___MSKLQSDALREAISQIMGDTKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPNRVF
A9NNS9_______________MSKLQSDVLREAISQVMADSKEKQRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKLGLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKTTMGKPNRIF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
293	10	89			1.0
418	75	25			1.0
421	75		25		1.0
589	21		78		1.0
763	18			81	0.999994
1167		17	82		1.0
1169		82		17	1.0
1203	2			97	0.944212
1240	3		96		0.990463
1241		11		88	1.0
1278		89		10	0.999919
1280	88			11	0.999952
1291		10		90	0.90298
1295			62	37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain