SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32826

Length: 1194 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32826

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L3 n=1 Tax=Pinus monticola RepID=D3IZ07_PINMO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11650.1	ATOSM34, OSM34 osmotin 34 chr4:7025127-7026113 REVERSE LENGTH=244	58%
RefSeq	Arabidopsis thaliana	NP_192902.1	osmotin-like protein OSM34 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002299547.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQJ2

Fln msg:

Fln protein: MARAMGVSLALLAALSICALQGVSSATFEIQNECPFTVWAAGTPRGGGKQLERGQSWTVEVPAGTTLGRFWGRTGCSFDGSGKGTCKTGDCGGLLNCQGWGNVPATLAEYALNQYQNLDFYDISLVDGFNLPMKMIPSSSQCKTIGCTSDINSKCPAQLKVTDGCKSACAAFNTPQYCCTGSFLDNCPPTDYSRFFKGQCPQAYSYARDDATSTFTCPGGTNYKVVFCGAGTSLEDHLHSVQ*

Protein Length: 244

Fln nts: ATGCTAACAGAGGCGGCTAGTTCACTGAACAGGGCGGCGTCGATGTTGAAAAACAGGCACCAGATCGACTCTATATATTCTACTTCTCAAGTCTCAGAATACTACATCTACAATTGCTCTGAACGCTTTACGAACTCACTCATATACTGTCTCAAGTTCGAATCACAGCGGTTGTA_-_ATGGCGAGAGCGATGGGAGTTTCGCTCGCACTCCTGGCAGCGTTAAGCATTTGCGCCCTCCAAGGTGTGAGTAGTGCGACCTTCGAGATCCAGAACGAGTGCCCCTTCACGGTTTGGGCAGCCGGGACTCCCCGCGGCGGAGGGAAACAGCTGGAGCGAGGGCAGTCCTGGACAGTTGAAGTCCCCGCGGGAACAACACTAGGAAGGTTTTGGGGACGCACGGGGTGTTCCTTCGATGGAAGTGGCAAAGGAACGTGCAAAACCGGGGACTGCGGAGGTCTGCTAAACTGTCAAGGGTGGGGAAACGTCCCCGCCACTCTGGCGGAATACGCTCTGAATCAATACCAGAACCTCGACTTTTATGACATCTCTCTCGTCGACGGATTCAACCTGCCCATGAAAATGATACCCTCCAGCTCTCAGTGCAAAACAATCGGGTGCACCAGCGACATAAATTCCAAGTGCCCCGCACAACTCAAGGTGACCGACGGATGCAAGAGCGCCTGCGCCGCTTTCAATACACCGCAATATTGCTGCACAGGGTCGTTTTTGGATAATTGCCCTCCCACCGATTATTCGCGTTTCTTCAAGGGACAATGCCCGCAGGCGTACAGCTATGCAAGAGACGATGCCACCAGCACTTTCACTTGTCCCGGAGGCACTAACTATAAAGTCGTCTTCTGCGGCGCTGGCACTTCCCTTGAAGATCATCTCCACTCTGTACAGTGA___TCTACTGTAATCTCCTGTAAACCCTTCTGAATAAACAAACGCCGGCCGATATATTATCGTATATCCCGTGATAGGAAAAATCGTATCTTCAAAACGTGTGATAAATACTACTTTTGTAGGAAGTAAAGAAATAAAAGATGATAGAGGCGTGATAGCCTTTATTAGGTTGTTTTTACTTTATCCTCCAGTGTCTGGTTTTTTCTGGTTCAATCATAACAAACAAGGGGTTATATGCGTTAATTTGGTGTCTATCCTGGTTTTGATCTTAAAATGGATATTATTATTATGG

Fln Alignment:

Contig32826___MARAMGVSXXXXXXXSICALQGVSSATFEIQNECPFTVWAAGTPRGGGKQLERGQSWTVEVPAGTTLGRFWGRTGCSFXXXXXXXXXXXXXXXXXNCQGWGNVPATLAEYALNQYQNLDFYDISLVDGFNLPMKMIPSSSQCKTIGCTSDINSKCPAQLKVTDGCKSACAAFNTPQYCCTGSFLDNCPPTDYSRFFKGQCPQAYSYARDDATSTFTCPGGTNYKVVFCGAGTSLEDHLHS
B8LQJ2_______________MARAMGVSLALMAVLFVCAVQGVICATFEIRNECSFTVWAAGTPRGGGQKLERGQSWTVEVPAGTTLGRFWGRTGCSFDGSGRGSCKTGDCGGVLNCQGWGNVPATLAEYALNQYQNLDFYDISLVDGFNLPMIMIPSASQCTKVRCSSDINSKCPAELRVADGCKSACAAFNTPQYCCTGSFLDNCPPTDYSRFFKGECPQAYSYARDDATSTFTCPGGTNYKVVFCGAGTSLEDNLYS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
728		12	87		0.992554
882	12		87		0.999964
1013		95	4		0.99997
1021			96	3	0.983282
1070	3	40	55		1.0
1086		14		71	0.984337
1087	16	83			0.994512
1088	16	83			0.994512
1089	16			83	0.994512
1090	16	83			0.994512
1091	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1181	1192	TAT TAT TAT TAT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain