SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32775

Length: 968 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32775 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold	-	-	2.0e-25	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Oxidoreductase, putative	-	-	8.335e-09	-

Source	Gene names
Sma3	AX110; At1g34200; At1g66130; At4g09670; F15E12.2; F17A8.20; F23M19.12; GSVIVT00005440001; GSVIVT00005442001; GSVIVT00013350001; GSVIVT00013352001; LOC_Os10g26390; OSJNBa0044A10.21; Os10g0403700; OsI_33501; PHYPADRAFT_110284; PHYPADRAFT_175112; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, N-terminal	IPR000683	-	-
Sma3	Oxidoreductase, C-terminal	IPR004104	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09670.1	Oxidoreductase family protein chr4:6107382-6109049 REVERSE LENGTH=362	53%
RefSeq	Arabidopsis thaliana	NP_192705.1	uncharacterized oxidoreductase [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002306732.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
42	66	33			0.997452
100		33		66	0.997452
302		75		25	0.996473
555	16		83		0.994512
820		20		80	0.995493
824	20		80		0.995493
825	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain