SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32653

Length: 927 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32653

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L10 n=2 Tax=Pinaceae RepID=RL10_PINTA	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	60S ribosomal protein L10	-	-	3.522e-10	-

Source	Gene names
Sma3	ACI29; AT1G66580; At1g14320; At1g26910; At1g66580; CHLREDRAFT_195584; F14L17.9; GSVIVT00006249001; GSVIVT00023920001; LOC_Os03g21470; LP20; MICPUCDRAFT_24102; MICPUN_93045; OSTLU_30754; Os03g0332500; OsI_017927; OsI_034350; OsI_11423; OsI_18615; OsJ_10719

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26910.1	RPL10B Ribosomal protein L16p/L10e family protein chr1:9321709-9322813 FORWARD LENGTH=221	72%
RefSeq	Arabidopsis thaliana	NP_174013.1	60S ribosomal protein L10-2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002326063.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPP8

Fln msg: Separated hits, possible frame ERROR between 323 and 326, and overlapping frame ERROR between 550 and 538, W2: There is no M at the beginning,

Fln protein: IPAIYLNYGRSARCCKLKDGPARCHRQIKNKPYPKSRYSRVAPDPKIRIYDVGAKKRAADEFPFCVHLENVTI*ALEAARIACNNYMAKFAGKDAFHLRVRVYPLHxxRINRTLSCAGAYRLQSGMIGAFGKPQGTCARVAMGQVLLSVQCRDTHTNHAQETLRRAKFKFPGW*KIIxxxxxxxSKYARADYLKWTLENRIIPDGVNAKLLGCRGGLSNQRPGHALVKLAHEILQLK*

Protein Length: 239

Fln nts: CAATTCCAGCGATTTATCTCAACTACGGGCGTTCGGCTCGCTGTTGTAAATTAAAGGATGGTCCAGCGAGATGTCATCGTCAGATTAAGAACAAACCCTACCCGAAATCTCGATACTCTCGGGTCGCTCCAGATCCCAAAATCCGCATATACGATGTTGGTGCCAAGAAAAGAGCAGCGGACGAGTTTCCTTTCTGCGTTCACCTGGAAAATGTAACGATCTAGGCGCTGGAAGCGGCCCGTATTGCGTGTAACAATTACATGGCCAAGTTTGCCGGAAAGGACGCGTTCCATCTGCGTGTTCGTGTGTATCCATTACATGTxxxCCGCATTAACAGGACGCTTTCGTGCGCCGGAGCCTATAGGCTTCAAAGTGGAATGATAGGAGCGTTTGGAAAACCGCAGGGAACTTGTGCACGCGTGGCGATGGGCCAAGTGCTCCTTTCAGTACAATGCAGGGACACCCACACAAATCATGCCCAAGAAACTCTGCGTCGTGCCAAGTTCAAATTCCCTGGCTGGTAGAAAATTATTGTxxxxxxxxxxxxxxxxxxTTCCAAGTATGCCAGAGCTGACTACTTGAAATGGACGTTAGAAAACAGAATTATTCCCGATGGTGTGAATGCCAAGTTGCTTGGTTGCCGCGGTGGATTGTCCAACCAACGTCCTGGGCACGCATTAGTCAAGCTAGCTCATGAAATTCTTCAGCTGAAATAGTTGCTTAGATTAGTGCTTTGTTGTGGTTGATAAATGAAGAGCCTTAAAAGCTTGCCTGTTCATCAAGGTGTAATCCTCGTCACTTCTTAATGACTCAAGTTTATCTCGTTACGATAGTCGTGAGTGATAGAGTTGTGCAGTTGAATATTGTTCTTATATTTATTTGTATTGTCCTCGCTGGCATTCGCAAGCGAGCTCATGATTCTTCAGATG

Fln Alignment:

Contig32653___PARCHRQIKNKPYPKSRYSRVAPDPKIRIYDVGAKKRAADEFPFCVHL-----ENVTI*ALEAARIACNNYMAKFAGKDAFHLRVRVYPLHVxRINRTLSCAGAYRLQSGMIGAFGKPQGTCARVAMGQVLLSVQCRDTHTNHAQETLRRAKFKFPGW*KIIVSxxxxGSKYARADYLKWTLENRIIPDGVNAKLLGCRGGLSNQRPGHALVKLAHE
A9NPP8_______________PARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGAKKRVADEFPFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVxRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNHSNHAQEALRRAKFKFPGRQKIIVSxxxxFTKYTRADYLKWKSENRLIPDGVNAKLLGCRGRLSNRRPGQAFLKPAHD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
730			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain