SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32611

Length: 1175 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32611 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Early nodulin, putative n=2 Tax=fabids RepID=B9SEN5_RICCO	-	-	2.0e-16	52%
FL-Next	sp=Early nodulin-93; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	61%
Sma3	Early nodulin protein	-	-	2.121e-09	-

Source	Gene names
Sma3	57h21.33; 57h21.34; At5g25940; GSVIVT00016856001; GmENOD93; Os02g0227200; Os06g0141700; Os06g0142300; OsENOD93b; OsI_06438; OsI_21578; OsI_21579; OsI_21584; OsJ_05958; OsJ_20076; OsJ_20082; P0495C02.34; P0535G04.10; P0535G04.16; P0535G04.9-1; P0620H05.7;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nodulation	GO:0009877	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Early nodulin 93 ENOD93 protein	IPR005050	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G25940.1	early nodulin-related chr5:9054252-9055151 REVERSE LENGTH=115	4.0e-12	61%
RefSeq	Arabidopsis thaliana	NP_197966.1	early nodulin-related protein [Arabidopsis thaliana]	5.0e-12	61%
RefSeq	Populus trichocarpa	XP_002305557.1	predicted protein [Populus trichocarpa]	2.0e-21	62%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
465		60		40	1.0
484	90	10			0.90298
495	90		10		0.90298
522		22		77	0.999999
578	20	80			0.995493
624	85			14	0.993533
665	87		12		0.992554
684	14		85		0.993533
972		25	75		1.0
973	83	16			0.999991
974		16	75	8	0.99999
975	81	18			0.999994
977	81			18	0.999994
981	75		25		1.0
1025	83	16			0.994512
1026		16		83	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
215	226	TGA TGA TGA TGA	12
944	957	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain