SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32598

Length: 722 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32598 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rho GTPase n=1 Tax=Polysphondylium pallidum RepID=D3BBX9_POLPA	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Putative rac protein	-	-	2.218e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	5.791e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		5.791e-09	%
Sma3	Metabolic pathways	01100		5.791e-09	%

Source	Gene names
Sma3	ARAC1; ARAC10; ARAC11; ARAC2; ARAC3; ARAC4; ARAC5; ARAC6; ARAC7; ARAC8; ARAC9; ATGP2; ATGP3; At1g20090; At2g17800; At2g44690; At3g48040; At4g28950; At4g35020; At5g45970; At5g62880; F16B22.18; F25O24.70; GSVIVT00003019001; GSVIVT00014385001; GSVIVT00016143

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	site of polarized growth	GO:0030427	Cellular Component	-
Sma3	apical part of cell	GO:0045177	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51300.1	ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 RHO-related protein from plants 1 chr3:19043197-19044215 FORWARD LENGTH=197	54%
RefSeq	Arabidopsis thaliana	NP_190698.1	Rac-like GTP-binding protein ARAC11 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002326847.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	Probability
348	10		90	0.90298
354	90		10	0.90298
396		88	11	0.923564
570	12		87	0.992554
681	87		12	0.992554
712	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain