SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32545

Length: 522 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32545

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L23 n=54 Tax=Deuterostomia RepID=RL23_HUMAN	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	60S ribosomal protein L23	-	-	1.151e-10	-

Source	Gene names
Sma3	At1g04480; CHLREDRAFT_159282; F19P19.5; GSVIVT00020335001; GSVIVT00028518001; LOC_Os03g04590; LOC_Os10g32920; MICPUCDRAFT_37554; MICPUN_90970; OJ1293_E04.23; OSJNBa0006L06.7; OSTLU_18267; Os02g0814700; Os03g0139100; Os10g0466700; OsI_09417; OsI_09939; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04400.1	emb2171 Ribosomal protein L14p/L23e family protein chr3:1167339-1168308 FORWARD LENGTH=140	82%
RefSeq	Arabidopsis thaliana	NP_563707.1	60S ribosomal protein L23 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002335793.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
102	90			10	0.90298
117	18			81	0.999994
120		81		18	0.999994
150		18		81	0.999994
234	80	20			0.999996
314	20			80	0.999996
336	54		36	9	1.0
375		16		83	0.999991
381		83		16	0.999991
402	33		66		1.0
403			16	83	0.999991
404		16	83		0.999991
405		16		83	0.999991
420	81	18			0.999994
432		72		27	1.0
436			63	36	1.0
438		10		90	0.90298
450		88		11	0.923564
455		87	12		0.992554
463	87			12	0.992554
465		12		87	0.992554
468	87	12			0.992554
476	87	12			0.992554
477		87		12	0.992554
478	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain