SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32526

Length: 864 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32526 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium-binding EF-hand-containing protein [Arabidopsis thaliana] gb\|AAD38259.1\|AC006193_15 Unknown protein [Arabidopsis thaliana] gb\|AAL49953.1\| At1g64850/F13O11_15 [Arabidopsis thaliana] gb\|AAM26663.1\| At1g64850/F13O11_15 [Arabidopsis thaliana] gb\|AAM64	-	-	1.0e-08	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
168		30		69	1.0
257	88		11		0.923564
263	55	33	11		1.0
271		33		66	1.0
288	10			90	0.90298
289		10		90	0.90298
291	10		90		0.90298
292		10	90		0.90298
293			10	90	0.90298
304	11		88		0.923564
309	11			88	0.923564
557		10		90	0.90298
558	90		10		0.90298
574			90	10	0.90298
583	88		11		0.923564
611		85	14		0.993533
622		50		50	1.0
623	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain