SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32525

Length: 736 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32525 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S60 ribosomal protein L10 n=1 Tax=Dictyostelium fasciculatum RepID=F4PJ98_9MYCE	-	-	0.0	75%
FL-Next	sp=60S ribosomal protein L10-1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	74%
Sma3	60S ribosomal protein L10	-	-	6.257e-14	-

Source	Gene names
Sma3	ACI29; AT1G66580; At1g14320; At1g26910; At1g66580; CHLREDRAFT_195584; F14L17.9; GSVIVT00006249001; GSVIVT00023920001; LOC_Os03g21470; LP20; MICPUCDRAFT_24102; MICPUN_93045; OSTLU_30754; Os03g0332500; OsI_017927; OsI_034350; OsI_11423; OsI_18615; OsJ_10719

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G66580.1	SAG24, RPL10C senescence associated gene 24 chr1:24839208-24840439 FORWARD LENGTH=221	71%
RefSeq	Arabidopsis thaliana	NP_564878.1	60S ribosomal protein L10-3 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002319437.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
317	14	85			0.993533
365	16		83		0.994512
464		88		11	0.923564
479		11	88		0.923564
500		87	12		0.992554
503		87	12		0.992554
506	87	12			0.992554
536	14		85		0.993533
539	14		85		0.993533
571			85	14	0.993533
575		14	85		0.993533
629	16		83		0.994512
641	83	16			0.994512
643			83	16	0.994512
644	83		16		0.994512
647	16		83		0.994512
666	16		83		0.994512
669	83			16	0.994512
670		16		83	0.994512
672	16			83	0.994512
674			16	83	0.994512
677	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain