SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32482

Length: 936 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32482 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	GT-2 factor	-	-	5.614e-08	-

Source	Gene names
Sma3	At1g33240; DF1; GSVIVT00000450001; GSVIVT00031772001; GSVIVT00034901001; GSVIVT00034998001; GT-2A; GT2; GTL1; GTL2; H0115B09.8; LOC_Os03g02240; OSJNBa0011L07.15; OSJNBa0090O10.6; Os03g0113500; OsI_09711; OsI_16822; OsI_34323; OsJ_09149; OsJ_32161; P0510C1

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76880.1	Duplicated homeodomain-like superfamily protein chr1:28865594-28867931 FORWARD LENGTH=603	4.0e-20	68%
RefSeq	Arabidopsis thaliana	NP_177814.1	putative trihelix DNA-binding protein [Arabidopsis thaliana]	5.0e-20	68%
RefSeq	Populus trichocarpa	XP_002300534.1	predicted protein, partial [Populus trichocarpa]	2.0e-23	71%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
848	83		16		0.999991
869			88	11	0.923564
880	87	12			0.992554
881		12	87		0.992554
882	87	12			0.992554
884		87		12	0.992554
895		14	85		0.993533
896	83	16			0.994512
897		16	83		0.994512
898	83	16			0.994512
900			83	16	0.994512
920	33		33	33	0.997753
921		33	66		0.997452
922	66		33		0.997452
923	33		33	33	0.997753
924	33			66	0.997452

SSRs (tot: 3)

Start position	End position	Sequence	Length
221	234	TGC TGC TGC TGC TG	14
756	767	GCA GCA GCA GCA	12
799	816	AGCTG AGCTG AGCTG AGC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain