SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32474

Length: 3875 nt

UniGene Fasta

>sp_v3.0_unigene32474
ATTTTTTCACCCTTTGACTCAAATCTACTCTCCCCGCCTCACTCGAACGACGGCAAAAGCTACCAAAGTTGTTTGTTCGTCAAATTTTAAAACCCTCGCTGGTTCAAGGGTTTCCAATTTGCGCCCCAGCTTTCCATACAGGTTCTGGTATCTATCCTCCGCAGCTGAGCCGAGCCGAGCCATGGGCAAGCGCGGTAGGAGTTCATCAGACGACCTGGCTTCCTCCGAGGAAGAACGGCCACAGAATGAAGAATCGAGCCCAGACGAAGAAGAGGACGACCAGGAAGAGCTCGAAGCCGTAACTCGGCCGACGGCAGACGAGGACGAAGAGGATGAAGACACTCAGCCGGCGAATGCGTCCAGCGCAGACGACGATCAAGATGCCTCTGCCAGCGACGATCAAGATGCTTCTGCCGAAACTGATGACGACGCCCAGCAAAAACCAGTGAGTGCAGAGGTTGCAAAGCGTGAAAGGCAAAGACTCAAAGAACTTCAGAAGCTAAAAAAGGAGAAGCTTGCTGAAGCTTTGTCTCAGCAAAATTCTGCAATTGATGCAGACATGAATAACAAAGCAAAAGGGCGATTGAAGTTTCTTTTACAGCAAACAGAGATATTTGCTCATTTTGCTCAGGGGGCTGATGCAGCAAAAGAGAAAAAACCCAGGGGCAGAGGTCGGCTTCAATCGAAAATCACCGAGGAAGAAGAAGATGAAGAGTACCTTAAAGAAGAGGAGAATTCTCTAACTGGTTCTGGGAGCACAAGATTAATGACACAACCTTCTTGTATCCAAGGGAAGATGAGAGATTACCAGCTAGCTGGATTGAACTGGCTTATTCGGCTGTATGAAAATGGCATAAATGGAATACTTGCAGATGAAATGGGTCTTGGAAAAACCTTGCAAACAATTTCCCTACTTGGTTATTTATATGAATTTCGAGGGATCAAAGGTCCTCATATGGTTGTGGCACCGAAATCAACTCTTGGTAACTGGATTAATGAGATTCGGCGTTTCTGCCCTATTTTTCGGGCAGTCAAGTTCCTTGGGAACCAAGATGAAAGGATTCATATACGTGAAAACCTTCTGGTTCCTGGGAAATTTGATATATGTGTTACTAGTTTTGAAATGGCAATTAAAGAAAAGACTGCACTTAAACGTTTCAGTTGGCGATACATTATTATTGATGAAGCGCATCGAATAAAGAATGAAAATTCACTTCTTGCAAAGACTATGAGAATCTACAGCACCAACTACAGGCTTCTTATAACTGGCACACCTCTTCAAAACAACCTTCACGAACTCTGGTCTCTTCTCAATTTCTTACTTCCAGAAATTTTTAGTTCTGCTGAAACTTTTGATGACTGGTTCCAAATATCAGCTGACAATGACCAACAAGAAGTGGTTCAACAACTTCATAAGGTTCTTCGGCCATTTCTTCTACGGAGACTGAAGTCAGATGTTGAAAAGGGTCTGCCTCCTAAAAAGGAAACCATATTGAAAGTTGGAATGTCACAAATGCAAAAGCAATTTTACCGGGCATTGCTTCAAAAAGATTTGGATGTTGTGAATGCTGGAGGAGAGCGTAAGCGCCTTTTGAATATAGCCATGCAATTGAGGAAGTGCTGCAACCATCCATATCTCTTTCAGGGTGCTGAGCCAGGTCCACCATACACCACTGGAGACCATCTAATCACCAATGCAGGCAAAATGGTTCTTTTGGATAAGTTGCTTCCAAAACTGAAGGACCGTGATTCCAGAGTTCTTATTTTTTCACAGATGACAAGACTGTTGGACATTCTGGAGGATTATTGTATGTTCCGTGGATATCAGTATTGTCGAATTGATGGGAATACTTCAGGAGAGGATCGTGATGCTTCCATAGATTCTTTCAATCAAGAAGGGAGTGAAAAGTTTATTTTCTTGCTTTCAACCAGAGCTGGAGGCCTTGGTATTAACCTTGCCACAGCAGATGTGGTCATTTTGTATGACAGTGACTGGAATCCACAAGTTGATCTACAAGCCCAGGATCGTGCACATAGAATTGGACAGAAGAAAGAAGTTCAAGTTTTCCGCTTTTGTACAGAGTACACTATAGAGGAAAAGGTGATTGAAAGGGCTTATAAGAAGCTTGCACTTGATGCATTGGTCATACAACAAGGACGTCTAGCAGAACAAAAAACTGTAAACAAGGATGAGTTGTTGCAGATGGTGAGGTTTGGTGCAGAAATGGTATTTAGCTCCAAAGATAGCACCATAACTGATGAAGATATTGACCGAATTATTGCGAAAGGCGAGGAGGCTACAGCAGAGCTGGATGCAAAGATGAAGAAGTTCACAGAAGATGCAATCAAGTTCAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGAAAAGGATGAAAAGTTTGACTTCAAGAAAGTGGTCGCTGATAACTGGATTGAACCTCCGAAGCGTGAACGGAAACGCAACTATTCTGAGTCAGATTATTTCAAACAAGCAATGCGACAGGGTGGGCCAGCAAAACCAAGAGAGCCTCGCATTCCTCGCATGCCTCAATTGCATGATTTTCAATTTTTCAATGTTCAACGTTTAACGGAGCTATATGAGAAGGAAGTTCGCTATCTAATGCAAACACACCAAAGAAATCAAGCAAAAGATACTCTTGGGGAAGGAGATGACACGGAAGATATTGGAGAACCACTCACAGTTGATGAACAAGAAGAGAAAGAGCAGCTATTGGAGGAGGGTTTTTCCAATTGGACTCGTAGAGATTTCAATACGTTTGTGCGTGCCTGTGAAAAATATGGGCGGATTGATATTAAAAGCATTGCTGCTGAAATGGAAGGCAAAACTGAGGAGGAAGTTGAGAGATATGCGAATGTTTTCAAAGAACGATACAAGGAGTTAAATGATTATGATAGGATAGTCAAAAACATAGAAAGGGGAGAGGCTCGCATATCTCGCAAAGATGAGATAATGAAGGCAATTGGGAAGAAGTTGGATCGCTATAAAAATCCTTGGCTGGAACTTAAGATCCAATATGGTCAGAATAAAGGAAAGTTATATAATGAAGAATGTGATCGTTTTATGTTGTGCATGGTCCACAAACTTGGCTATGGAAATTGGGATGAGTTGAAGGCTGCTTTTCGCATGTCACCCCTTTTTAGGTTTGATTGGTTTGTCAAGTCTCGTACTTCAAATGAGCTCGCAAGGCGTTGTGATACTCTAATTCGTTTAGTTGAGCGAGAAAATCAGGAGGTGGATGAAAGGGAACGGCAGGCTCGTAAAGAAAAGAAGCTTGCTAAGGGTATGGCTCCTGCAAAAAGGCCTGTACCCAAATCTCTTGTCATGGACTCTACGCCTAGTACCGGTGGTATGTCAGCTAAGAAGAGGAAACAATCAAGCATGGATGAATTTTTGAACTCTCAGGGGAAGAAGAGGAGGTGATGCCACAAGTTTTGAGGCGGTCATTGTCTACGAGTCAATAGCTATTGACAATCCTTCAGGCTAATTATTGTAATATCATAATGTTAATCATTTTTTCAGCCCACTAAGATGGTGCTTACTGCCAGAGGGGAGTTGCCAGATCAGAATTAGTTTTACCTTGAGTAGGCACGTTAGGCCCTTTTGGACAACGGAAAACATATGTGGTCTTTTCATAGGGGTATCAAATGTTGGTATCCTCCAGGCAAAATTGAGAAGATTACTCTTTTACATAGGTGTTTGGTTATAGGATCAAGTTGGTCGGTGCTCAATGAGATTTGCACTTGATCACGATGATGGTTTGTCGGAATTTTTATTGGTATAAAAGTTTCGATTTTGTTAATACTCGTTTAAAATTTTAGAATTTGAAGAATCTTGTGTTGCGATT

Ace file of the UniGene sp_v3.0_unigene32474

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative SWI/SNF related, matrix associated, actin dependent regulator of chromatin [Oryza sativa] dbj\|BAB64747.1\| putative DNA-dependent ATPase [Oryza sativa Japonica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	cDNA clone:001-115-D05, full insert sequence	-	-	-

Source	Gene names
Sma3	OsJ_01780;

Source	InterPros	Term	Type	Identity
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3		IPR014021	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	SNF2-related	IPR000330	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18620.2	-	83%
RefSeq	Arabidopsis thaliana	NP_001189827.1	chromatin-remodeling protein 11 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002315568.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACE0

Fln msg: your sequence is longer than subject: 1090 - 203

Fln protein: MGKRGRSSSDDLASSEEERPQNEESSPDEEEDDQEELEAVTRPTADEDEEDEDTQPANASSADDDQDASASDDQDASAETDDDAQQKPVSAEVAKRERQRLKELQKLKKEKLAEALSQQNSAIDADMNNKAKGRLKFLLQQTEIFAHFAQGADAAKEKKPRGRGRLQSKITEEEEDEEYLKEEENSLTGSGSTRLMTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWINEIRRFCPIFRAVKFLGNQDERIHIRENLLVPGKFDICVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLAKTMRIYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDDWFQISADNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQFYRALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYCMFRGYQYCRIDGNTSGEDRDASIDSFNQEGSEKFIFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDEKFDFKKVVADNWIEPPKRERKRNYSESDYFKQAMRQGGPAKPREPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQTHQRNQAKDTLGEGDDTEDIGEPLTVDEQEEKEQLLEEGFSNWTRRDFNTFVRACEKYGRIDIKSIAAEMEGKTEEEVERYANVFKERYKELNDYDRIVKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTSNELARRCDTLIRLVERENQEVDERERQARKEKKLAKGMAPAKRPVPKSLVMDSTPSTGGMSAKKRKQSSMDEFLNSQGKKRR*

Protein Length: 1091

Fln nts: ATTTTTTCACCCTTTGACTCAAATCTACTCTCCCCGCCTCACTCGAACGACGGCAAAAGCTACCAAAGTTGTTTGTTCGTCAAATTTTAAAACCCTCGCTGGTTCAAGGGTTTCCAATTTGCGCCCCAGCTTTCCATACAGGTTCTGGTATCTATCCTCCGCAGCTGAGCCGAGCCGAGCC_-_ATGGGCAAGCGCGGTAGGAGTTCATCAGACGACCTGGCTTCCTCCGAGGAAGAACGGCCACAGAATGAAGAATCGAGCCCAGACGAAGAAGAGGACGACCAGGAAGAGCTCGAAGCCGTAACTCGGCCGACGGCAGACGAGGACGAAGAGGATGAAGACACTCAGCCGGCGAATGCGTCCAGCGCAGACGACGATCAAGATGCCTCTGCCAGCGACGATCAAGATGCTTCTGCCGAAACTGATGACGACGCCCAGCAAAAACCAGTGAGTGCAGAGGTTGCAAAGCGTGAAAGGCAAAGACTCAAAGAACTTCAGAAGCTAAAAAAGGAGAAGCTTGCTGAAGCTTTGTCTCAGCAAAATTCTGCAATTGATGCAGACATGAATAACAAAGCAAAAGGGCGATTGAAGTTTCTTTTACAGCAAACAGAGATATTTGCTCATTTTGCTCAGGGGGCTGATGCAGCAAAAGAGAAAAAACCCAGGGGCAGAGGTCGGCTTCAATCGAAAATCACCGAGGAAGAAGAAGATGAAGAGTACCTTAAAGAAGAGGAGAATTCTCTAACTGGTTCTGGGAGCACAAGATTAATGACACAACCTTCTTGTATCCAAGGGAAGATGAGAGATTACCAGCTAGCTGGATTGAACTGGCTTATTCGGCTGTATGAAAATGGCATAAATGGAATACTTGCAGATGAAATGGGTCTTGGAAAAACCTTGCAAACAATTTCCCTACTTGGTTATTTATATGAATTTCGAGGGATCAAAGGTCCTCATATGGTTGTGGCACCGAAATCAACTCTTGGTAACTGGATTAATGAGATTCGGCGTTTCTGCCCTATTTTTCGGGCAGTCAAGTTCCTTGGGAACCAAGATGAAAGGATTCATATACGTGAAAACCTTCTGGTTCCTGGGAAATTTGATATATGTGTTACTAGTTTTGAAATGGCAATTAAAGAAAAGACTGCACTTAAACGTTTCAGTTGGCGATACATTATTATTGATGAAGCGCATCGAATAAAGAATGAAAATTCACTTCTTGCAAAGACTATGAGAATCTACAGCACCAACTACAGGCTTCTTATAACTGGCACACCTCTTCAAAACAACCTTCACGAACTCTGGTCTCTTCTCAATTTCTTACTTCCAGAAATTTTTAGTTCTGCTGAAACTTTTGATGACTGGTTCCAAATATCAGCTGACAATGACCAACAAGAAGTGGTTCAACAACTTCATAAGGTTCTTCGGCCATTTCTTCTACGGAGACTGAAGTCAGATGTTGAAAAGGGTCTGCCTCCTAAAAAGGAAACCATATTGAAAGTTGGAATGTCACAAATGCAAAAGCAATTTTACCGGGCATTGCTTCAAAAAGATTTGGATGTTGTGAATGCTGGAGGAGAGCGTAAGCGCCTTTTGAATATAGCCATGCAATTGAGGAAGTGCTGCAACCATCCATATCTCTTTCAGGGTGCTGAGCCAGGTCCACCATACACCACTGGAGACCATCTAATCACCAATGCAGGCAAAATGGTTCTTTTGGATAAGTTGCTTCCAAAACTGAAGGACCGTGATTCCAGAGTTCTTATTTTTTCACAGATGACAAGACTGTTGGACATTCTGGAGGATTATTGTATGTTCCGTGGATATCAGTATTGTCGAATTGATGGGAATACTTCAGGAGAGGATCGTGATGCTTCCATAGATTCTTTCAATCAAGAAGGGAGTGAAAAGTTTATTTTCTTGCTTTCAACCAGAGCTGGAGGCCTTGGTATTAACCTTGCCACAGCAGATGTGGTCATTTTGTATGACAGTGACTGGAATCCACAAGTTGATCTACAAGCCCAGGATCGTGCACATAGAATTGGACAGAAGAAAGAAGTTCAAGTTTTCCGCTTTTGTACAGAGTACACTATAGAGGAAAAGGTGATTGAAAGGGCTTATAAGAAGCTTGCACTTGATGCATTGGTCATACAACAAGGACGTCTAGCAGAACAAAAAACTGTAAACAAGGATGAGTTGTTGCAGATGGTGAGGTTTGGTGCAGAAATGGTATTTAGCTCCAAAGATAGCACCATAACTGATGAAGATATTGACCGAATTATTGCGAAAGGCGAGGAGGCTACAGCAGAGCTGGATGCAAAGATGAAGAAGTTCACAGAAGATGCAATCAAGTTCAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGAAAAGGATGAAAAGTTTGACTTCAAGAAAGTGGTCGCTGATAACTGGATTGAACCTCCGAAGCGTGAACGGAAACGCAACTATTCTGAGTCAGATTATTTCAAACAAGCAATGCGACAGGGTGGGCCAGCAAAACCAAGAGAGCCTCGCATTCCTCGCATGCCTCAATTGCATGATTTTCAATTTTTCAATGTTCAACGTTTAACGGAGCTATATGAGAAGGAAGTTCGCTATCTAATGCAAACACACCAAAGAAATCAAGCAAAAGATACTCTTGGGGAAGGAGATGACACGGAAGATATTGGAGAACCACTCACAGTTGATGAACAAGAAGAGAAAGAGCAGCTATTGGAGGAGGGTTTTTCCAATTGGACTCGTAGAGATTTCAATACGTTTGTGCGTGCCTGTGAAAAATATGGGCGGATTGATATTAAAAGCATTGCTGCTGAAATGGAAGGCAAAACTGAGGAGGAAGTTGAGAGATATGCGAATGTTTTCAAAGAACGATACAAGGAGTTAAATGATTATGATAGGATAGTCAAAAACATAGAAAGGGGAGAGGCTCGCATATCTCGCAAAGATGAGATAATGAAGGCAATTGGGAAGAAGTTGGATCGCTATAAAAATCCTTGGCTGGAACTTAAGATCCAATATGGTCAGAATAAAGGAAAGTTATATAATGAAGAATGTGATCGTTTTATGTTGTGCATGGTCCACAAACTTGGCTATGGAAATTGGGATGAGTTGAAGGCTGCTTTTCGCATGTCACCCCTTTTTAGGTTTGATTGGTTTGTCAAGTCTCGTACTTCAAATGAGCTCGCAAGGCGTTGTGATACTCTAATTCGTTTAGTTGAGCGAGAAAATCAGGAGGTGGATGAAAGGGAACGGCAGGCTCGTAAAGAAAAGAAGCTTGCTAAGGGTATGGCTCCTGCAAAAAGGCCTGTACCCAAATCTCTTGTCATGGACTCTACGCCTAGTACCGGTGGTATGTCAGCTAAGAAGAGGAAACAATCAAGCATGGATGAATTTTTGAACTCTCAGGGGAAGAAGAGGAGGTGA___TGCCACAAGTTTTGAGGCGGTCATTGTCTACGAGTCAATAGCTATTGACAATCCTTCAGGCTAATTATTGTAATATCATAATGTTAATCATTTTTTCAGCCCACTAAGATGGTGCTTACTGCCAGAGGGGAGTTGCCAGATCAGAATTAGTTTTACCTTGAGTAGGCACGTTAGGCCCTTTTGGACAACGGAAAACATATGTGGTCTTTTCATAGGGGTATCAAATGTTGGTATCCTCCAGGCAAAATTGAGAAGATTACTCTTTTACATAGGTGTTTGGTTATAGGATCAAGTTGGTCGGTGCTCAATGAGATTTGCACTTGATCACGATGATGGTTTGTCGGAATTTTTATTGGTATAAAAGTTTCGATTTTGTTAATACTCGTTTAAAATTTTAGAATTTGAAGAATCTTGTGTTGCGATT

Fln Alignment:

Contig32474___MEGKTEEEVERYANVFKERYKELNDYDRIVKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTSNELARRCDTLIRLVERENQEVDERERQARKEKK-LAKGMAPAKRPVPKSLVMDSTPSTGGMSAKKRKQSSMDEFLNSQGKKRR
D5ACE0_______________MEGKTEEEVERYANVFKERYKELNDYDRIVKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTSNELARRCDTLIRLVERENQEVDERERQARKDKKQLAKSMAPAKRPVSKSLVTESTPSTGGMSAKKRKQSSMDDFLNSQGKKRR

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
88			83	16	0.994512
310			45	55	1.0
442	86	2	2		1.0
1431	25			75	0.996473
1432	25			75	0.996473
1434		75	25		0.996473
1481	80			20	0.995493
1784	83		16		0.994512
1832	20			80	0.995493
1833		20		80	0.995493
1834	20		80		0.995493
1836		80		20	0.995493
1901			83	16	0.994512
1969	90			10	0.90298
2599		80		20	0.995493
2803	85		5		0.999793
2924		14		85	0.999981
2926			85	14	0.999981
2927			85	14	0.999981
2954		18	81		0.999994
2955	18		81		0.999994
2956		81		18	0.999994
2987	88		11		0.923564
3021	10	90			0.90298
3022		90	10		0.90298
3026			90	10	0.90298
3032	90		10		0.90298
3128	20			80	0.999996
3129	20			80	0.999996
3130	20		80		0.999996
3212		84	15		0.999986
3435	26		66		1.0
3438	71		7		1.0
3439	85		14		0.999981
3717	8		4	86	0.999539
3721	82		17		1.0
3831	88	11			0.923564
3835		12		87	0.992554
3836		85	14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
167	181	GAGCC GAGCC GAGCC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain